Evidence map›Paper›PMID 35019725›Full record

ArticleJournal of virology2022

ICP22 of Herpes Simplex Virus 1 Decreases RNA Polymerase Processivity.

Claire H Birkenheuer, Laura Dunn, Rachel Dufour, Joel D Baines

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Claire H BirkenheuerBaker Institute of Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.ORCID 0000-0002-9834-6995
Laura DunnBaker Institute of Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
Rachel DufourDepartment of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, Louisiana, USA.
Joel D BainesBaker Institute of Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.ORCID 0000-0002-6397-2830
Louisiana State University · US

Funding

How HSV repurposes host transcriptional machinery for viral gene expressionR01AI141968 · NIAID · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI BAINES, JOEL D. · 2019 to 2023
$1.9M
Biomedical Research Experience for Veterinary StudentsT35OD011151 · OD · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI MARTINEZ, JUAN J · 2012 to 2023
$681k
RNA Polymerase II Occupancy and Activity in HSV-Infected Post Mitotic NeuronsR21AI148926 · NIAID · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI BAINES, JOEL D. · 2020 to 2021
$390k
NIAID NIH HHS R01 AI141968NIAID NIH HHS R21 AI148926NIH HHS T35 OD011151
6 · The paper itself

Abstract

To determine the role of ICP22 in transcription, we performed precise nuclear run-on followed by deep sequencing (PRO-seq) and global nuclear run-on with sequencing (GRO-seq) in cells infected with a viral mutant lacking the entire ICP22-encoding α22 (US1/US1.5) gene and a virus derived from this mutant bearing a restored α22 gene. At 3 h postinfection (hpi), the lack of ICP22 reduced RNA polymerase (Pol) promoter proximal pausing (PPP) on the immediate early α4, α0, and α27 genes. Diminished PPP at these sites accompanied increased Pol processivity across the entire herpes simplex virus 1 (HSV-1) genome in GRO-seq assays, resulting in substantial increases in antisense and intergenic transcription. The diminished PPP on α gene promoters at 3 hpi was distinguishable from effects caused by treatment with a viral DNA polymerase inhibitor at this time. The ICP22 mutant had multiple defects at 6 hpi, including lower viral DNA replication, reduced Pol activity on viral genes, and increased Pol activity on cellular genes. The lack of ICP22 also increased PPP release from most cellular genes, while a minority of cellular genes exhibited decreased PPP release. Taken together, these data indicate that ICP22 acts to negatively regulate transcriptional elongation on viral genes in part to limit antisense and intergenic transcription on the highly compact viral genome. This regulatory function directly or indirectly helps to retain Pol activity on the viral genome later in infection.

Indexed as

Herpes SimplexHerpesvirus 1, HumanImmediate-Early ProteinsDNA ReplicationDNA, ViralHumansRNA Polymerase IIVirus ReplicationDNA, ViralICP22 protein, human herpesvirus 1Immediate-Early ProteinsRNA Polymerase IIherpes simplex virusRNA polymerase IItranscriptiontranscriptional regulationviral replication

Identifiers

PMID35019725
PMCPMC8906429
OpenAlexW4206096970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.