Evidence map›Paper›PMID 35019716›Full record

ArticleJournal of virology2022

The Hinge Region of the Israeli Acute Paralysis Virus Internal Ribosome Entry Site Directs Ribosomal Positioning, Translational Activity, and Virus Infection.

Mathew P Kirby, Ciara Stevenson, Liam J Worrall, Yihang Chen, Christina Young, Jisoo Youm, Natalie C J Strynadka, Douglas W Allan, Eric Jan

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Ins and outs of IRES elements: function and significance.Biochemical Society transactions · 2025
    Review
  3. Article
  4. Article
  5. Ribosome biogenesis in disease: new players and therapeutic targets.Signal transduction and targeted therapy · 2023
    Review
  6. The Genomic 3' UTR of Flaviviruses Is a Translation Initiation Enhancer.International journal of molecular sciences · 2022
    Article
  7. Lost in Translation: When the Rules Do Not Apply.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mathew P KirbyDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Ciara StevensonDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Liam J WorrallDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Yihang ChenDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Christina YoungDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Jisoo YoumDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Natalie C J StrynadkaDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.ORCID 0000-0002-4058-9425
Douglas W AllanDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbiagrid.17091.3e, Vancouver, Canada.
Eric JanDepartment of Biochemistry and Molecular Biology, University of British Columbiagrid.17091.3e, Vancouver, Canada.ORCID 0000-0003-0523-8467
University of British Columbia · CA

Funding

CIHR 20R76320CIHR PJT-148761
6 · The paper itself

Abstract

All viruses must usurp host ribosomes for viral protein synthesis. Dicistroviruses utilize an intergenic region internal ribosome entry site (IGR IRES) to directly recruit ribosomes and mediate translation initiation from a non-AUG start codon. The IGR IRES adopts a three-pseudoknot structure that comprises a ribosome binding domain of pseudoknot II and III (PKII and PKIII), and a tRNA-like anticodon domain (PKI) connected via a short, one to three nucleotide hinge region. Recent cryo-EM structural analysis of the dicistrovirus Taura syndrome virus (TSV) IGR IRES bound to the ribosome suggests that the hinge region may facilitate translocation of the IRES from the ribosomal A to P site. In this study, we provide mechanistic and functional insights into the role of the hinge region in IGR IRES translation. Using the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV), as a model, we demonstrate that mutations of the hinge region resulted in decreased IRES-dependent translation

Indexed as

DicistroviridaeInternal Ribosome Entry SitesVirus DiseasesVirusesAnimalsMutationProtein BiosynthesisRabbitsRibosomesViral ProteinsInternal Ribosome Entry SitesViral Proteinsinfectious clonesinternal ribosome entry siteIRESIsraeli acute paralysis virusribosomeRNARNA structureRNA virustranslationtranslational controlvirus

Identifiers

PMID35019716
PMCPMC8906427
OpenAlexW4205996567

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.