Evidence map›Paper›PMID 35018885›Full record

ArticleeLife2022

Chromatin topology defines estradiol-primed progesterone receptor and PAX2 binding in endometrial cancer cells.

Alejandro La Greca, Nicolás Bellora, François Le Dily, Rodrigo Jara, Ana Silvina Nacht, Javier Quilez Oliete, José Luis Villanueva, Enrique Vidal, Gabriela Merino, Cristóbal Fresno and 6 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Alejandro La GrecaBiology and Experimental Medicine Institute, IBYME-CONICET, Buenos Aires, Argentina.ORCID 0000-0002-0309-7683
Nicolás Bellora *Institute of Nuclear Technologies for Health, INTECNUS-CONICET, Bariloche, Argentina.ORCID 0000-0001-6637-3465
François Le Dily *Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
Rodrigo JaraBiology and Experimental Medicine Institute, IBYME-CONICET, Buenos Aires, Argentina.
Ana Silvina NachtCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
Javier Quilez OlieteCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
José Luis VillanuevaCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
Enrique VidalCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
Gabriela MerinoBioscience Data Mining Group, Córdoba University, Córdoba, Argentina.
Cristóbal FresnoBioscience Data Mining Group, Córdoba University, Córdoba, Argentina.
Inti Tarifa ReischleBiology and Experimental Medicine Institute, IBYME-CONICET, Buenos Aires, Argentina.
Griselda VallejoBiology and Experimental Medicine Institute, IBYME-CONICET, Buenos Aires, Argentina.
Guillermo VicentCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
Elmer FernándezConsejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.
Miguel BeatoCentre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology, Barcelona, Spain.
Patricia SaragüetaBiology and Experimental Medicine Institute, IBYME-CONICET, Buenos Aires, Argentina.ORCID 0000-0001-8222-9690
Consejo Nacional de Investigaciones Científicas y Técnicas · ARBarcelona Institute of Science and Technology · ESUniversitat Pompeu Fabra · ESCordoba University · USCentro Científico Tecnológico - Tucumán · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Estrogen (E2) and Progesterone (Pg), via their specific receptors (ERalpha and PR), are major determinants in the development and progression of endometrial carcinomas, However, their precise mechanism of action and the role of other transcription factors involved are not entirely clear. Using Ishikawa endometrial cancer cells, we report that E2 treatment exposes a set of progestin-dependent PR binding sites which include both E2 and progestin target genes. ChIP-seq results from hormone-treated cells revealed a non-random distribution of PAX2 binding in the vicinity of these estrogen-promoted PR sites. Altered expression of hormone regulated genes in PAX2 knockdown cells suggests a role for PAX2 in fine-tuning ERalpha and PR interplay in transcriptional regulation. Analysis of long-range interactions by Hi-C coupled with ATAC-seq data showed that these regions, that we call 'progestin control regions' (PgCRs), exhibited an open chromatin state even before hormone exposure and were non-randomly associated with regulated genes. Nearly 20% of genes potentially influenced by PgCRs were found to be altered during progression of endometrial cancer. Our findings suggest that endometrial response to progestins in differentiated endometrial tumor cells results in part from binding of PR together with PAX2 to accessible chromatin regions. What maintains these regions open remains to be studied.

Indexed as

Endometrial NeoplasmsReceptors, ProgesteroneCell Line, TumorChromatinEstradiolEstrogen Receptor alphaFemaleHumansPAX2 Transcription FactorProgesteroneChromatinEstradiolEstrogen Receptor alphaPAX2 protein, humanPAX2 Transcription FactorProgesteroneReceptors, Progesteronecancer biologycell biologyChIPseqestrogen receptorgene regulationhumanPAX2progesterone receptor

Identifiers

PMID35018885
PMCPMC8887898
OpenAlexW4206326996

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.