Evidence map›Paper›PMID 35018451›Full record

ArticleInflammatory bowel diseases2022

Inflammatory Bowel Disease Risk Variants Are Associated with an Increased Risk of Skin Cancer.

Kelly C Cushing, Xiaomeng Du, Yanhua Chen, L C Stetson, Annapurna Kuppa, Vincent L Chen, J Michelle Kahlenberg, Johann E Gudjonsson, Brett Vanderwerff, Peter D R Higgins and 1 more

Open access · greenAbstract read
In one paragraph

Article in Inflammatory bowel diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Managing IBD in patients with previous cancers.Frontline gastroenterology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Kelly C CushingDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-3914-9673
Xiaomeng DuDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
Yanhua ChenDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
L C StetsonDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
Annapurna KuppaDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
Vincent L ChenDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
J Michelle KahlenbergDepartment of Internal Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.
Johann E GudjonssonDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.
Brett VanderwerffDepartment of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Peter D R HigginsDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
Elizabeth K SpeliotesDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan, Ann Arbor, MI, USA.
University of Michigan · US

Funding

University of Michigan Skin Biology and Diseases Resource-based CenterP30AR075043 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Johann Eli Gudjonsson · 2019 to 2026
$6.6M
Human population based genetic studies to elucidate the biology of NAFLDR01DK107904 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPELIOTES, ELIZABETH K · 2016 to 2020
$3.4M
Identification and functional impact of NAFLD associated genetic variantsR01DK106621 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPELIOTES, ELIZABETH K · 2015 to 2019
$3.3M
Integrative Polygenic Genetic Studies of Non-alcoholic Fatty Liver DiseaseR01DK131787 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPELIOTES, ELIZABETH K · 2022 to 2025
$2.7M
Linking Disease Mechanisms and Outcomes in Rheumatic DiseasesK24AR076975 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Joanne Michelle Kahlenberg · 2020 to 2026
$910k
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NIAMS NIH HHS K24 AR076975NIAMS NIH HHS P30 AR075043NIDDK NIH HHS R01 DK106621NIDDK NIH HHS R01 DK107904NIDDK NIH HHS R01 DK131787
6 · The paper itself

Abstract

backgroundInflammatory bowel disease is associated with an increased risk of skin cancer. The aims of this study were to determine whether IBD susceptibility variants are also associated with skin cancer susceptibility and if such risk is augmented by use of immune-suppressive therapy.

methodsThe discovery cohort included participants in the UK Biobank. The validation cohort included participants in the Michigan Genomics Initiative. The primary outcome of interest was skin cancer, subgrouped into nonmelanoma skin cancers (NMSC) and melanoma skin cancers (MSC). Multivariable logistic regression with matched controls (3 controls:1 case) was performed to identify genomic predictors of skin malignancy in the discovery cohort. Variants with P < .05 were tested for replication in the validation cohort. Validated Single nucleotide polymorphisms were then evaluated for effect modification by immune-suppressive medications.

resultsThe discovery cohort included 10,247 cases of NMSC and 1883 cases of MSC. The validation cohort included 7334 cases of NMSC and 3304 cases of MSC. Twenty-nine variants were associated with risk of NMSC in the discovery cohort, of which 5 replicated in the validation cohort (increased risk, rs7773324-A [DUSP22; IRF4], rs2476601-G [PTPN22], rs1847472-C [BACH2], rs72810983-A [CPEB4]; decreased risk, rs6088765-G [PROCR; MMP24]). Twelve variants were associated with risk of MSC in the discovery cohort, of which 4 were replicated in the validation cohort (increased risk, rs61839660-T [IL2RA]; decreased risk, rs17391694-C [GIPC2; MGC27382], rs6088765-G [PROCR; MMP24], and rs1728785-C [ZFP90]). No effect modification was observed.

conclusionsThe results of this study highlight shared genetic susceptibility across IBD and skin cancer, with increased risk of NMSC in those who carry risk variants in IRF4, PTPN22, CPEB4, and BACH2 and increased risk of MSC in those who carry a risk variant in IL2RA.

Indexed as

Inflammatory Bowel DiseasesSkin NeoplasmsBasic-Leucine Zipper Transcription FactorsCutaneous Malignant MelanomaEndothelial Protein C ReceptorHumansProtein Tyrosine Phosphatase, Non-Receptor Type 22Risk FactorsRNA-Binding ProteinsBasic-Leucine Zipper Transcription FactorsCPEB4 protein, humanEndothelial Protein C ReceptorProtein Tyrosine Phosphatase, Non-Receptor Type 22PTPN22 protein, humanRNA-Binding Proteinsgeneticsinflammatory bowel diseaseskin cancer

Identifiers

PMID35018451
PMCPMC9924040
OpenAlexW4225747903

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.