Evidence map›Paper›PMID 35017681›Full record

ArticleJournal of human genetics2022

Cis-regulated expression of non-conserved lincRNAs associates with cardiometabolic related traits.

Tingyi Cao, Marcella E O'Reilly, Caitlin Selvaggi, Esther Cynn, Heidi Lumish, Chenyi Xue, Anjali Jha, Muredach P Reilly, Andrea S Foulkes

Open access · greenAbstract read
In one paragraph

Article in Journal of human genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Human Macrophage Long Intergenic Noncoding RNA,Arteriosclerosis, thrombosis, and vascular biology · 2023
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Tingyi CaoBiostatistics, Massachusetts General Hospital, Boston, MA, USA. tingyi_cao@hsph.harvard.edu.ORCID http://orcid.org/0000-0002-4210-7127
Marcella E O'ReillyCardiology Division, Department of Medicine, Columbia University, New York, NY, USA.
Caitlin SelvaggiBiostatistics, Massachusetts General Hospital, Boston, MA, USA.
Esther CynnCardiology Division, Department of Medicine, Columbia University, New York, NY, USA.
Heidi LumishCardiology Division, Department of Medicine, Columbia University, New York, NY, USA.
Chenyi XueCardiology Division, Department of Medicine, Columbia University, New York, NY, USA.
Anjali JhaBiostatistics, Massachusetts General Hospital, Boston, MA, USA.
Muredach P Reilly *Cardiology Division, Department of Medicine, Columbia University, New York, NY, USA.
Andrea S Foulkes *Biostatistics, Massachusetts General Hospital, Boston, MA, USA.
Columbia University · USHarvard University · USMassachusetts General Hospital · US

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Elucidation of Tissue-Specific Transcriptomic Profiles in Cardiometabolic DiseaseR01HL113147 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LI, MINGYAO, REILLY, MUREDACH P · 2012 to 2022
$6.8M
Human LincRNAs in Macrophage Biology and Related Cardiometabolic DiseasesR01HL132561 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2017 to 2020
$2.8M
Computational and functional strategies to decipher lncRNAs in human atherosclerosisR01HL150359 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LI, MINGYAO, REILLY, MUREDACH P · 2020 to 2023
$2.7M
Methods for integrated analysis of multi-level omics dataR01GM127862 · NIGMS · MOUNT HOLYOKE COLLEGE · PI FOULKES, ANDREA S · 2018 to 2022
$1.7M
Mentored Patient Oriented Research in Cardiometabolic DiseaseK24HL107643 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI REILLY, MUREDACH P · 2011 to 2020
$1.4M
Statistical methods for modeling multi-omic dataR15GM126485 · NIGMS · MOUNT HOLYOKE COLLEGE · PI FOULKES, ANDREA S · 2017 to 2017
$453k
NCATS NIH HHS UL1 TR001873NHLBI NIH HHS K24 HL107643NHLBI NIH HHS R01 HL113147NHLBI NIH HHS R01 HL132561NHLBI NIH HHS R01 HL150359NIGMS NIH HHS R01 GM127862NIGMS NIH HHS R15 GM126485
6 · The paper itself

Abstract

Many complex disease risk loci map to intergenic regions containing long intergenic noncoding RNAs (lincRNAs). The majority of these is not conserved outside humans, raising the question whether genetically regulated expression of non-conserved and conserved lincRNAs has similar rates of association with complex traits. Here we leveraged data from the Genotype-Tissue Expression (GTEx) project and multiple public genome-wide association study (GWAS) resources. Using an established transcriptome-wide association study (TWAS) tool, FUSION, we interrogated the associations between cis-regulated expression of lincRNAs and multiple cardiometabolic traits. We found that cis-regulated expression of non-conserved lincRNAs had a strikingly similar trend of association with complex cardiometabolic traits as conserved lincRNAs. This finding challenges the conventional notion of conservation that has led to prioritization of conserved loci for functional studies and calls attention to the need to develop comprehensive strategies to study the large number of non-conserved human lincRNAs that may contribute to human disease.

Indexed as

Cardiovascular DiseasesRNA, Long NoncodingGenome-Wide Association StudyHumansMultifactorial InheritanceTranscriptomeRNA, Long Noncoding

Identifiers

PMID35017681
PMCPMC9038657
OpenAlexW4205640240

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.