ArticleCommunications biology2022
Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis.
Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed.
- Conserved trans-regulatory logic and evolving cis-modules drive the diversification of inducible diterpenoid biosynthetic gene clusters across the Oryzoideae.Plant & cell physiology · 2026Article
- Haplotype-resolved genome assembly of a cultivated variety of Zizania latifolia (Zhejiao7).Scientific data · 2026Article
- Seed shattering in a North American Oryzeae grain: Developmental and genomic signatures of early domestication.The plant genome · 2026Article
- Metabolomic response ofGM crops & food · 2025Article
- DNA Fingerprint Profile ofLife (Basel, Switzerland) · 2025Article
- The origin and evolution of cultivated rice and genomic signatures of heterosis for yield traits in super-hybrid rice.BMC biology · 2025Article
- Chromosome-level genome assembly of Jiaobai (Zizania latifolia, Poceace).Scientific data · 2025Article
- Evolution and diversification of the momilactone biosynthetic gene cluster in the genus Oryza.The New phytologist · 2025Article
- Article
- De novo assembly of a near-complete genome of aquatic vegetable Zizania latifolia in the Yangtze River Basin.Scientific data · 2024Article
- Signatures of local adaptation and maladaptation to future climate in wild Zizania latifolia.Communications biology · 2024Article
- Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages.Nature communications · 2024Article
- Transcriptomic and Phenotypic Analyses Reveal the Molecular Mechanism of Dwarfing in TetraploidInternational journal of molecular sciences · 2024Article
- Interactive transcriptome analyses of Northern Wild Rice (Frontiers in plant science · 2024Article
- Complete mitochondrial genome assembly ofFrontiers in plant science · 2024Article
- The next era of crop domestication starts now.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- Genetic Localization and Homologous Genes Mining for Barley Grain Size.International journal of molecular sciences · 2023Review
- Domestication, breeding, omics research, and important genes ofFrontiers in plant science · 2023Review
- Integrated transcriptome and metabolome analysis unveil the response mechanism in wild rice (Frontiers in genetics · 2023Article
- Systematic Analysis of BELL Family Genes inInternational journal of molecular sciences · 2022Article
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Abstract
Chinese wild rice (Zizania latifolia; family: Gramineae) is a valuable medicinal homologous grain in East and Southeast Asia. Here, using Nanopore sequencing and Hi-C scaffolding, we generated a 547.38 Mb chromosome-level genome assembly comprising 332 contigs and 164 scaffolds (contig N50 = 4.48 Mb; scaffold N50 = 32.79 Mb). The genome harbors 38,852 genes, with 52.89% of the genome comprising repetitive sequences. Phylogenetic analyses revealed close relation of Z. latifolia to Leersia perrieri and Oryza species, with a divergence time of 19.7-31.0 million years. Collinearity and transcriptome analyses revealed candidate genes related to seed shattering, providing basic information on abscission layer formation and degradation in Z. latifolia. Moreover, two genomic blocks in the Z. latifolia genome showed good synteny with the rice phytocassane biosynthetic gene cluster. The updated genome will support future studies on the genetic improvement of Chinese wild rice and comparative analyses between Z. latifolia and other plants.
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