Evidence map›Paper›PMID 35017564›Full record

ArticleNature communications2022

Mapping inhibitory sites on the RNA polymerase of the 1918 pandemic influenza virus using nanobodies.

Jeremy R Keown, Zihan Zhu, Loïc Carrique, Haitian Fan, Alexander P Walker, Itziar Serna Martin, Els Pardon, Jan Steyaert, Ervin Fodor, Jonathan M Grimes

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Jeremy R Keown *Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-0159-9257
Zihan Zhu *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Loïc Carrique *Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Haitian Fan *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Alexander P WalkerSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Itziar Serna MartinSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Els PardonVIB-VUB Center for Structural Biology, VIB, Brussels, Belgium.ORCID http://orcid.org/0000-0002-2466-0172
Jan SteyaertVIB-VUB Center for Structural Biology, VIB, Brussels, Belgium.ORCID http://orcid.org/0000-0002-3825-874X
Ervin FodorSir William Dunn School of Pathology, University of Oxford, Oxford, UK. ervin.fodor@path.ox.ac.uk.ORCID http://orcid.org/0000-0003-3249-196X
Jonathan M GrimesDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. jonathan@strubi.ox.ac.uk.
Centre for Human Genetics · GBUniversity of Oxford · GBVrije Universiteit Brussel · BEUniversity of Applied Sciences Utrecht · NLUniversity of Bristol · GB

Funding

Medical Research Council MC_PC_17137Medical Research Council MR/R009945/1Wellcome Trust 060208/Z/00/ZWellcome Trust 093305/Z/10/ZWellcome Trust 200835/Z/16/ZWellcome Trust 203141/Z/16/ZWellcome Trust (Wellcome) 200835/Z/16/Z
6 · The paper itself

Abstract

Influenza A viruses cause seasonal epidemics and global pandemics, representing a considerable burden to healthcare systems. Central to the replication cycle of influenza viruses is the viral RNA-dependent RNA polymerase which transcribes and replicates the viral RNA genome. The polymerase undergoes conformational rearrangements and interacts with viral and host proteins to perform these functions. Here we determine the structure of the 1918 influenza virus polymerase in transcriptase and replicase conformations using cryo-electron microscopy (cryo-EM). We then structurally and functionally characterise the binding of single-domain nanobodies to the polymerase of the 1918 pandemic influenza virus. Combining these functional and structural data we identify five sites on the polymerase which are sensitive to inhibition by nanobodies. We propose that the binding of nanobodies at these sites either prevents the polymerase from assuming particular functional conformations or interactions with viral or host factors. The polymerase is highly conserved across the influenza A subtypes, suggesting these sites as effective targets for potential influenza antiviral development.

Indexed as

PandemicsAnimalsCryoelectron MicroscopyDNA-Directed RNA PolymerasesGenome, ViralHEK293 CellsHumansInfluenza A virusModels, MolecularOrthomyxoviridaeProtein BindingProtein ConformationRNA-Dependent RNA PolymeraseRNA, ViralSf9 CellsSingle-Domain AntibodiesDNA-Directed RNA PolymerasesRNA-Dependent RNA PolymeraseRNA, ViralSingle-Domain AntibodiesViral Proteins

Identifiers

PMID35017564
PMCPMC8752864
OpenAlexW4206709073

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.