Evidence map›Paper›PMID 35017544›Full record

ArticleNature communications2022

Signatures of selection in recently domesticated macadamia.

Jishan Lin, Wenping Zhang, Xingtan Zhang, Xiaokai Ma, Shengcheng Zhang, Shuai Chen, Yibin Wang, Haifeng Jia, Zhenyang Liao, Jing Lin and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
10.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

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  15. Analysis of phylogenetic relationships inFrontiers in plant science · 2024
    Article
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  18. The genome of the king protea, Protea cynaroides.The Plant journal : for cell and molecular biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Jishan Lin *Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Wenping Zhang *Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Xingtan ZhangCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.ORCID http://orcid.org/0000-0002-5207-0882
Xiaokai MaCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Shengcheng ZhangCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Shuai ChenCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Yibin WangCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Haifeng JiaCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Zhenyang LiaoCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Jing LinCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Mengting ZhuCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Xiuming XuCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Mingxing CaiCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
Hui ZengSouth Subtropical Crop Research Institute, China Academy of Tropical Agricultural Sciences, 524091, Zhanjiang, China.
Jifeng WanSouth Subtropical Crop Research Institute, China Academy of Tropical Agricultural Sciences, 524091, Zhanjiang, China.
Weihai YangSouth Subtropical Crop Research Institute, China Academy of Tropical Agricultural Sciences, 524091, Zhanjiang, China.
Tracie MatsumotoUSDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI, 96720, USA.
Craig HardnerQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0001-7134-2524
Catherine J NockSouthern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia. cathy.nock@scu.edu.au.ORCID http://orcid.org/0000-0001-5609-4681
Ray MingDepartment of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 6180, USA. rayming@illinois.edu.ORCID http://orcid.org/0000-0002-9417-5789
Fujian Agriculture and Forestry University · CNChinese Academy of Tropical Agricultural Sciences · CNDaniel K. Inouye U.S. Pacific Basin Agricultural Research Center · USSouthern Cross University · AUThe University of Queensland · AUUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar 'Kau' and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for 'one-step operation' for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species.

Indexed as

DomesticationMacadamiaAustraliaChromosome MappingChromosomes, PlantCrops, AgriculturalFatty AcidsGene DuplicationGenome, PlantHawaiiHeat-Shock ResponseHumansProanthocyanidinsSeedsFatty AcidsproanthocyanidinProanthocyanidins

Identifiers

PMID35017544
PMCPMC8752631
OpenAlexW4205248974

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.