Evidence map›Paper›PMID 35017502›Full record

ArticleNature communications2022

Structural basis of BAK activation in mitochondrial apoptosis initiation.

Geetika Singh, Cristina D Guibao, Jayaraman Seetharaman, Anup Aggarwal, Christy R Grace, Dan E McNamara, Sivaraja Vaithiyalingam, M Brett Waddell, Tudor Moldoveanu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Cell Death: Mechanisms and Potential Targets in Breast Cancer Therapy.International journal of molecular sciences · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Mechanisms of BCL-2 family proteins in mitochondrial apoptosis.Nature reviews. Molecular cell biology · 2023
    Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Apoptotic mitochondrial poration by a growing list of pore-forming BCL-2 family proteins.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Geetika SinghDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Cristina D GuibaoDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jayaraman SeetharamanDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Anup AggarwalDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Christy R GraceDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Dan E McNamaraDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Sivaraja VaithiyalingamDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
M Brett WaddellDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Tudor MoldoveanuDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA. tudor.moldoveanu@stjude.org.ORCID http://orcid.org/0000-0003-0791-318X
St. Jude Children's Research Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Elucidating the structural basis of mitochondrial outer membrane permeabilization in apoptosisR01GM129470 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI MOLDOVEANU, TUDOR · 2020 to 2024
$1.7M
Phase II SER-CAT Optimization: Acquisition of a next generation area detectorS10RR028976 · NCRR · UNIVERSITY OF GEORGIA · PI WANG, BI-CHENG · 2010 to 2010
$1.5M
NCI NIH HHS P30 CA021765NCRR NIH HHS S10 RR028976NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM129470
6 · The paper itself

Abstract

BCL-2 proteins regulate mitochondrial poration in apoptosis initiation. How the pore-forming BCL-2 Effector BAK is activated remains incompletely understood mechanistically. Here we investigate autoactivation and direct activation by BH3-only proteins, which cooperate to lower BAK threshold in membrane poration and apoptosis initiation. We define in trans BAK autoactivation as the asymmetric "BH3-in-groove" triggering of dormant BAK by active BAK. BAK autoactivation is mechanistically similar to direct activation. The structure of autoactivated BAK BH3-BAK complex reveals the conformational changes leading to helix α1 destabilization, which is a hallmark of BAK activation. Helix α1 is destabilized and restabilized in structures of BAK engaged by rationally designed, high-affinity activating and inactivating BID-like BH3 ligands, respectively. Altogether our data support the long-standing hit-and-run mechanism of BAK activation by transient binding of BH3-only proteins, demonstrating that BH3-induced structural changes are more important in BAK activation than BH3 ligand affinity.

Indexed as

Apoptosisbcl-2 Homologous Antagonist-Killer ProteinBH3 Interacting Domain Death Agonist ProteinCell DeathCrystallography, X-RayHumansLigandsLiposomesMembrane ProteinsMitochondriaProto-Oncogene Proteins c-bcl-2BAK1 protein, humanbcl-2 Homologous Antagonist-Killer ProteinBCL2 protein, humanBH3 Interacting Domain Death Agonist ProteinBID protein, humanLigandsLiposomesMembrane ProteinsProto-Oncogene Proteins c-bcl-2

Identifiers

PMID35017502
PMCPMC8752837
OpenAlexW4205519345

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.