Evidence map›Paper›PMID 35017488›Full record

ArticleNature communications2022

A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.

Griffin M Schroeder, Chapin E Cavender, Maya E Blau, Jermaine L Jenkins, David H Mathews, Joseph E Wedekind

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  5. Article
  6. Full-Length NADBiochemistry · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Structure and function analysis of a type III preQThe Journal of biological chemistry · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. RPflex: A Coarse-Grained Network Model for RNA Pocket Flexibility Study.International journal of molecular sciences · 2023
    Article
  15. Discovering riboswitches: the past and the future.Trends in biochemical sciences · 2023
    Review
  16. Article
  17. TheNon-coding RNA · 2022
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Griffin M SchroederDepartment of Biochemistry & Biophysics, University of Rochester School of Medicine & Dentistry, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0001-6354-752X
Chapin E CavenderDepartment of Biochemistry & Biophysics, University of Rochester School of Medicine & Dentistry, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0002-5899-7953
Maya E BlauUniversity of Rochester, 120 Trustee Road, Rochester, NY, 14627, USA.ORCID http://orcid.org/0000-0002-8948-4982
Jermaine L JenkinsDepartment of Biochemistry & Biophysics, University of Rochester School of Medicine & Dentistry, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0003-2548-3275
David H MathewsDepartment of Biochemistry & Biophysics, University of Rochester School of Medicine & Dentistry, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0002-2907-6557
Joseph E WedekindDepartment of Biochemistry & Biophysics, University of Rochester School of Medicine & Dentistry, Rochester, NY, 14642, USA. joseph.wedekind@rochester.edu.ORCID http://orcid.org/0000-0002-4269-4229
University of Rochester · US

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Ritimukta Sarangi · 2020 to 2026
$43.3M
Mechanisms of Action On Non-Coding RNA MoleculesR01GM063162 · NIGMS · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2001 to 2024
$6.8M
Training in HIV Replication and PathogenesisT32AI049815 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2001 to 2020
$3.5M
Automated Comparative Sequence Analysis of RNA Secondary and Tertiary StructureR01GM132185 · NIGMS · UNIVERSITY OF ROCHESTER · PI MATHEWS, DAVID H. · 2019 to 2022
$1.2M
NIH Training Grant in the Chemistry-Biology InterfaceT32GM118283 · NIGMS · UNIVERSITY OF ROCHESTER · PI BREN, KARA L., FASAN, RUDI · 2017 to 2021
$850k
A shared macromolecular X-ray diffraction system in RochesterS10RR026501 · NCRR · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2010 to 2010
$478k
NCRR NIH HHS S10 RR026501NIAID NIH HHS T32 AI049815NIGMS NIH HHS P30 GM133894NIGMS NIH HHS R01 GM063162NIGMS NIH HHS R01 GM132185NIGMS NIH HHS T32 GM118283
6 · The paper itself

Abstract

Riboswitches are structured non-coding RNAs often located upstream of essential genes in bacterial messenger RNAs. Such RNAs regulate expression of downstream genes by recognizing a specific cellular effector. Although nearly 50 riboswitch classes are known, only a handful recognize multiple effectors. Here, we report the 2.60-Å resolution co-crystal structure of a class I type I preQ

Indexed as

RiboswitchBase PairingCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGene Expression Regulation, BacterialGenetic VectorsGreen Fluorescent ProteinsNeisseria gonorrhoeaeNucleic Acid ConformationNucleoside QPyrimidinonesPyrrolesRecombinant ProteinsRNA, Bacterial7-(aminomethyl)-7-deazaguanineGreen Fluorescent ProteinsNucleoside QPyrimidinonesPyrrolesRecombinant ProteinsRiboswitchRNA, BacterialRNA, Messenger

Identifiers

PMID35017488
PMCPMC8752633
OpenAlexW4205578619

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.