Evidence map›Paper›PMID 35013599›Full record

ArticleNature structural & molecular biology2022

IMPDH1 retinal variants control filament architecture to tune allosteric regulation.

Anika L Burrell, Chuankai Nie, Meerit Said, Jacqueline C Simonet, David Fernández-Justel, Matthew C Johnson, Joel Quispe, Rubén M Buey, Jeffrey R Peterson, Justin M Kollman

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  6. Chemical reviews · 2026
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  19. A journey into the regulatory secrets of theFrontiers in pharmacology · 2024
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Anika L BurrellDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Chuankai NieDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Meerit SaidDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-3150-3140
Jacqueline C SimonetCancer Epigenetics and Signaling Program, Fox Chase Cancer Center, Philadelphia, PA, USA.
David Fernández-JustelMetabolic Engineering Group, Departamento de Microbiología y Genética, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.ORCID http://orcid.org/0000-0001-5728-2756
Matthew C JohnsonDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Joel QuispeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Rubén M BueyMetabolic Engineering Group, Departamento de Microbiología y Genética, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.ORCID http://orcid.org/0000-0003-1263-0221
Jeffrey R PetersonCancer Epigenetics and Signaling Program, Fox Chase Cancer Center, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-0604-718X
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA. jkoll@uw.edu.ORCID http://orcid.org/0000-0002-0350-5827
University of Washington · USFox Chase Cancer Center · USUniversidad de Salamanca · ESUniversity of California, San Francisco · US

Funding

TRAINING PROGRAM IN CANCER RESEARCHT32CA009035 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN · 1985 to 2020
$10.5M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Specificity of Effector Activation by Rho Family GTPasesR01GM083025 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI PETERSON, JEFFREY R · 2008 to 2018
$3.2M
The Structure and Function of Metabolic FilamentsR01GM118396 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2016 to 2023
$2.9M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
University of Iowa – 3T ESP MRI ScannerS10OD030220 · OD · UNIVERSITY OF IOWA · PI MAGNOTTA, VINCENT A · 2021 to 2021
$1.9M
IMPDH structure and function in retinal degenerationR21EY031546 · NEI · UNIVERSITY OF WASHINGTON · PI BROCKERHOFF, SUSAN E, KOLLMAN, JUSTIN M · 2020 to 2021
$479k
IMPDH1 structure and function in the healthy and diseased retinaF31EY030732 · NEI · UNIVERSITY OF WASHINGTON · PI BURRELL, ANIKA LAUREN · 2019 to 2021
$116k
NCI NIH HHS T32 CA009035NEI NIH HHS F31 EY030732NEI NIH HHS R21 EY031546NIGMS NIH HHS R01 GM083025NIGMS NIH HHS R01 GM118396NIGMS NIH HHS T32 GM008268NIH HHS S10 OD023476NIH HHS S10 OD030220
6 · The paper itself

Abstract

Inosine-5'-monophosphate dehydrogenase (IMPDH), a key regulatory enzyme in purine nucleotide biosynthesis, dynamically assembles filaments in response to changes in metabolic demand. Humans have two isoforms: IMPDH2 filaments reduce sensitivity to feedback inhibition, while IMPDH1 assembly remains uncharacterized. IMPDH1 plays a unique role in retinal metabolism, and point mutants cause blindness. Here, in a series of cryogenic-electron microscopy structures we show that human IMPDH1 assembles polymorphic filaments with different assembly interfaces in extended and compressed states. Retina-specific splice variants introduce structural elements that reduce sensitivity to GTP inhibition, including stabilization of the extended filament form. Finally, we show that IMPDH1 disease mutations fall into two classes: one disrupts GTP regulation and the other has no effect on GTP regulation or filament assembly. These findings provide a foundation for understanding the role of IMPDH1 in retinal function and disease and demonstrate the diverse mechanisms by which metabolic enzyme filaments are allosterically regulated.

Indexed as

Adenosine TriphosphateAllosteric RegulationBinding SitesCatalytic DomainGuanosine TriphosphateHEK293 CellsHumansIMP DehydrogenaseModels, MolecularNADRetinaRetinal DiseasesAdenosine TriphosphateGuanosine TriphosphateIMP DehydrogenaseNAD

Identifiers

PMID35013599
PMCPMC9044917
OpenAlexW4226106853

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.