Evidence map›Paper›PMID 35013515›Full record

ArticleCommunications biology2022

Electron microscopy analysis of ATP-independent nucleosome unfolding by FACT.

Anastasiia L Sivkina, Maria G Karlova, Maria E Valieva, Laura L McCullough, Timothy Formosa, Alexey K Shaytan, Alexey V Feofanov, Mikhail P Kirpichnikov, Olga S Sokolova, Vasily M Studitsky

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Beyond Chaperoning: The Multifaceted Role of FACT in Chromatin Transactions.International journal of molecular sciences · 2025
    Review
  5. Article
  6. Beyond the mono-nucleosome.Biochemical Society transactions · 2025
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Mechanism of curaxin-dependent nucleosome unfolding by FACT.Frontiers in molecular biosciences · 2022
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 5 countries.

Anastasiia L Sivkina *Biology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia.
Maria G Karlova *Biology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia.
Maria E Valieva *Biology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia.
Laura L McCulloughDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84132, USA.
Timothy FormosaDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84132, USA.ORCID http://orcid.org/0000-0002-8477-2483
Alexey K ShaytanBiology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia.ORCID http://orcid.org/0000-0003-0312-938X
Alexey V FeofanovBiology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia.
Mikhail P KirpichnikovBiology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia.
Olga S SokolovaBiology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia. sokolova@mail.bio.msu.ru.
Vasily M StuditskyBiology Faculty, Lomonosov Moscow State University, Moscow, 119992, Russia. vasily.studitsky@fccc.edu.ORCID http://orcid.org/0000-0002-7389-7993
Lomonosov Moscow State University · RUFox Chase Cancer Center · USUniversity of Utah · USNational Research University Higher School of Economics · RU

Funding

Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACTR01GM064649 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 2002 to 2022
$6.4M
Mechanism of yFACT Action during Chromatin TranscriptionR01GM119398 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI STILLMAN, DAVID J, STUDITSKY, VASILY M · 2017 to 2020
$1.3M
NIGMS NIH HHS R01 GM064649NIGMS NIH HHS R01 GM119398Russian Science Foundation (RSF) 19-74-30003
6 · The paper itself

Abstract

FACT is a histone chaperone that participates in nucleosome removal and reassembly during transcription and replication. We used electron microscopy to study FACT, FACT:Nhp6 and FACT:Nhp6:nucleosome complexes, and found that all complexes adopt broad ranges of configurations, indicating high flexibility. We found unexpectedly that the DNA binding protein Nhp6 also binds to the C-terminal tails of FACT subunits, inducing more open geometries of FACT even in the absence of nucleosomes. Nhp6 therefore supports nucleosome unfolding by altering both the structure of FACT and the properties of nucleosomes. Complexes formed with FACT, Nhp6, and nucleosomes also produced a broad range of structures, revealing a large number of potential intermediates along a proposed unfolding pathway. The data suggest that Nhp6 has multiple roles before and during nucleosome unfolding by FACT, and that the process proceeds through a series of energetically similar intermediate structures, ultimately leading to an extensively unfolded form.

Indexed as

Adenosine TriphosphateDNA-Binding ProteinsHigh Mobility Group ProteinsHumansMicroscopy, Electron, TransmissionNucleosomesProtein FoldingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsAdenosine TriphosphateDNA-Binding ProteinsFACT protein, S cerevisiaeHigh Mobility Group ProteinsNucleosomesSaccharomyces cerevisiae ProteinsSSRP1 protein, humanTranscriptional Elongation Factors

Identifiers

PMID35013515
PMCPMC8748794
OpenAlexW4206063887

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.