Evidence map›Paper›PMID 35013309›Full record

ArticleNature communications2022

Genomic alterations and evolution of cell clusters in metastatic invasive micropapillary carcinoma of the breast.

Qianqian Shi, Kang Shao, Hongqin Jia, Boyang Cao, Weidong Li, Shichen Dong, Jian Liu, Kailiang Wu, Meng Liu, Fangfang Liu and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
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  11. Breast cancer: pathogenesis and treatments.Signal transduction and targeted therapy · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Qianqian Shi *Department of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.ORCID http://orcid.org/0000-0002-5266-6731
Kang Shao *BGI-Shenzhen, 518120, Shenzhen, China.ORCID http://orcid.org/0000-0001-5779-8840
Hongqin Jia *Department of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.
Boyang Cao *BGI-Shenzhen, 518120, Shenzhen, China.
Weidong LiDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.
Shichen DongBGI-Shenzhen, 518120, Shenzhen, China.
Jian LiuDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.
Kailiang WuDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.
Meng LiuBGI-Shenzhen, 518120, Shenzhen, China.
Fangfang LiuDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.
Hanlin ZhouBGI-Shenzhen, 518120, Shenzhen, China.ORCID http://orcid.org/0000-0001-8562-6819
Jianke LvDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.
Feng GuDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China.ORCID http://orcid.org/0000-0002-0101-8283
Luyuan LiState Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, 300071, Tianjin, China.
Shida ZhuBGI-Shenzhen, 518120, Shenzhen, China.
Shuai LiDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China. shuaili@tmu.edu.cn.ORCID http://orcid.org/0000-0001-5079-4425
Guibo LiBGI-Shenzhen, 518120, Shenzhen, China. liguibo@genomics.cn.ORCID http://orcid.org/0000-0002-6141-4931
Li FuDepartment of Breast Cancer Pathology and Research Laboratory, Tianjin Medical University Cancer Institute and Hospital, 300060, Tianjin, China. fuli@tmu.edu.cn.ORCID http://orcid.org/0000-0001-7761-5618
Tianjin Medical University Cancer Institute and Hospital · CNBGI Group (China) · CNNankai University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Invasive micropapillary carcinoma (IMPC) has very high rates of lymphovascular invasion and lymph node metastasis and has been reported in several organs. However, the genomic mechanisms underlying its metastasis are unclear. Here, we perform whole-genome sequencing of tumor cell clusters from primary IMPC and paired axillary lymph node metastases. Cell clusters in multiple lymph node foci arise from a single subclone of the primary tumor. We find evidence that the monoclonal metastatic ancestor in primary IMPC shares high frequency copy-number loss of PRDM16 and IGSF9 and the copy number gain of ALDH2. Immunohistochemistry analysis further shows that low expression of IGSF9 and PRDM16 and high expression of ALDH2 are associated with lymph node metastasis and poor survival of patients with IMPC. We expect these genomic and evolutionary profiles to contribute to the accurate diagnosis of IMPC.

Indexed as

Aldehyde Dehydrogenase, MitochondrialBreast NeoplasmsCarcinoma, PapillaryDNA-Binding ProteinsEvolution, MolecularFemaleGene DosageGene Expression ProfilingGene Expression Regulation, NeoplasticHumansImmunoglobulinsLymphatic MetastasisMultigene FamilyNeoplasm InvasivenessNerve Tissue ProteinsSignal TransductionAldehyde Dehydrogenase, MitochondrialALDH2 protein, humanDNA-Binding ProteinsIGSF9 protein, humanImmunoglobulinsNerve Tissue ProteinsPRDM16 protein, humanTranscription Factors

Identifiers

PMID35013309
PMCPMC8748639
OpenAlexW4206002853

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.