Evidence map›Paper›PMID 35013168›Full record

ArticleNature communications2022

Lifelong single-cell profiling of cranial neural crest diversification in zebrafish.

Peter Fabian, Kuo-Chang Tseng, Mathi Thiruppathy, Claire Arata, Hung-Jhen Chen, Joanna Smeeton, Nellie Nelson, J Gage Crump

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
6.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 73 citations in OpenAlex.

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  7. A dual role for GLI3 signaling in neural crest development.Development (Cambridge, England) · 2026
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  9. Specialized gas-exchange endothelium of the zebrafish gill.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Peter Fabian *Eli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.ORCID 0000-0002-1096-6875
Kuo-Chang Tseng *Eli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.ORCID 0000-0002-4870-7801
Mathi Thiruppathy *Eli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.ORCID 0000-0002-6337-3256
Claire Arata *Eli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.ORCID 0000-0003-1535-1818
Hung-Jhen ChenEli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.
Joanna SmeetonEli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.ORCID 0000-0002-6126-2560
Nellie NelsonEli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA.ORCID 0000-0003-3220-5601
J Gage CrumpEli and Edythe Broad California Institute for Regenerative Medicine Center for Regenerative Medicine and Stem Cell Research, Department of Stem Cell Biology and Regenerative Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, 90033, USA. gcrump@usc.edu.ORCID 0000-0002-3209-0026
University of Southern California · US

Funding

Progenitor Regulation in Craniofacial Development and RegenerationR35DE027550 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CRUMP, GAGE D · 2017 to 2024
$8.0M
Training in Developmental Biology, Stem Cells and RegenerationT32HD060549 · NICHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Gage D Crump · 2011 to 2026
$2.5M
Endogenous stem cells in jaw joint cartilage and ligament regenerationR00DE027218 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SMEETON, JOANNA MARJORIE · 2020 to 2022
$729k
Single-cell analysis of the craniofacial skeletal stem cell nicheK99DE029858 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FABIAN, PETER · 2020 to 2021
$206k
Dissecting Stem Cell Heterogeneity in the Zebrafish Skeletal SystemF31DE029682 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ARATA, CLAIRE ELIZABETH · 2020 to 2023
$189k
Investigating the emergence of vertebrate cranial cartilage diversityF31DE030706 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THIRUPPATHY, MATHI · 2021 to 2023
$143k
NICHD NIH HHS T32 HD060549NIDCR NIH HHS F31 DE029682NIDCR NIH HHS F31 DE030706NIDCR NIH HHS K99 DE029858NIDCR NIH HHS R00 DE027218NIDCR NIH HHS R35 DE027550
6 · The paper itself

Abstract

The cranial neural crest generates a huge diversity of derivatives, including the bulk of connective and skeletal tissues of the vertebrate head. How neural crest cells acquire such extraordinary lineage potential remains unresolved. By integrating single-cell transcriptome and chromatin accessibility profiles of cranial neural crest-derived cells across the zebrafish lifetime, we observe progressive and region-specific establishment of enhancer accessibility for distinct fates. Neural crest-derived cells rapidly diversify into specialized progenitors, including multipotent skeletal progenitors, stromal cells with a regenerative signature, fibroblasts with a unique metabolic signature linked to skeletal integrity, and gill-specific progenitors generating cell types for respiration. By retrogradely mapping the emergence of lineage-specific chromatin accessibility, we identify a wealth of candidate lineage-priming factors, including a Gata3 regulatory circuit for respiratory cell fates. Rather than multilineage potential being established during cranial neural crest specification, our findings support progressive and region-specific chromatin remodeling underlying acquisition of diverse potential.

Indexed as

Neural CrestSingle-Cell AnalysisAnimalsCell DifferentiationChromatinGene Expression Regulation, DevelopmentalSkullTranscriptomeZebrafishChromatin

Identifiers

PMID35013168
PMCPMC8748784
OpenAlexW4206208365

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.