Evidence map›Paper›PMID 35013162›Full record

ArticleNature communications2022

The transcription factor ZIP-1 promotes resistance to intracellular infection in Caenorhabditis elegans.

Vladimir Lažetić, Fengting Wu, Lianne B Cohen, Kirthi C Reddy, Ya-Ting Chang, Spencer S Gang, Gira Bhabha, Emily R Troemel

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Viral infection drives cell-intrinsic re-localization of thebioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Novel infection byInfection and immunity · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Vladimir LažetićDivision of Biological Sciences, University of California, San Diego, La Jolla, California, CA, USA.ORCID http://orcid.org/0000-0001-5825-6584
Fengting WuDivision of Biological Sciences, University of California, San Diego, La Jolla, California, CA, USA.ORCID http://orcid.org/0000-0001-6320-8288
Lianne B CohenDivision of Biological Sciences, University of California, San Diego, La Jolla, California, CA, USA.
Kirthi C ReddyDivision of Biological Sciences, University of California, San Diego, La Jolla, California, CA, USA.
Ya-Ting ChangDepartment of Cell Biology, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-2580-4622
Spencer S GangDivision of Biological Sciences, University of California, San Diego, La Jolla, California, CA, USA.
Gira BhabhaDepartment of Cell Biology, New York University School of Medicine, New York, NY, USA.
Emily R TroemelDivision of Biological Sciences, University of California, San Diego, La Jolla, California, CA, USA. etroemel@ucsd.edu.ORCID http://orcid.org/0000-0003-2422-0473
University of California San Diego · USNew York University · US

Funding

UCSD/SDSU IRACDAK12GM068524 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TREJO, JOANN · 2003 to 2025
$24.4M
The Intracellular Pathogen Response Triggers Defense Against Co-evolved PathogensR01GM114139 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Emily R Troemel · 2015 to 2026
$3.1M
Probing organismal proteostasis through the response to intracellular infectionR01AG052622 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Emily R Troemel · 2017 to 2026
$2.7M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
NIA NIH HHS R01 AG052622NIGMS NIH HHS K12 GM068524NIGMS NIH HHS R01 GM114139NIH HHS S10 OD026929
6 · The paper itself

Abstract

Defense against intracellular infection has been extensively studied in vertebrate hosts, but less is known about invertebrate hosts; specifically, the transcription factors that induce defense against intracellular intestinal infection in the model nematode Caenorhabditis elegans remain understudied. Two different types of intracellular pathogens that naturally infect the C. elegans intestine are the Orsay virus, which is an RNA virus, and microsporidia, which comprise a phylum of fungal pathogens. Despite their molecular differences, these pathogens induce a common host transcriptional response called the intracellular pathogen response (IPR). Here we show that zip-1 is an IPR regulator that functions downstream of all known IPR-activating and regulatory pathways. zip-1 encodes a putative bZIP transcription factor, and we show that zip-1 controls induction of a subset of genes upon IPR activation. ZIP-1 protein is expressed in the nuclei of intestinal cells, and is at least partially required in the intestine to upregulate IPR gene expression. Importantly, zip-1 promotes resistance to infection by the Orsay virus and by microsporidia in intestinal cells. Altogether, our results indicate that zip-1 represents a central hub for triggers of the IPR, and that this transcription factor has a protective function against intracellular pathogen infection in C. elegans.

Indexed as

Basic-Leucine Zipper Transcription FactorsCaenorhabditis elegansEnterocytesAnimalsCaenorhabditis elegans ProteinsHost-Pathogen InteractionsImmunity, InnateIntestinesInvertebratesMicrosporidiaRNA VirusesBasic-Leucine Zipper Transcription FactorsCaenorhabditis elegans Proteins

Identifiers

PMID35013162
PMCPMC8748929
OpenAlexW4206726195

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.