Evidence map›Paper›PMID 35013161›Full record

ArticleNature communications2022

A de novo paradigm for male infertility.

M S Oud, R M Smits, H E Smith, F K Mastrorosa, G S Holt, B J Houston, P F de Vries, B K S Alobaidi, L E Batty, H Ismail and 31 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 98 citations in OpenAlex.

  1. Article
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  7. Genetic diversity of infertile males in India.Journal of assisted reproduction and genetics · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 20 institutions in 13 countries.

M S Oud *Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-9513-3030
R M Smits *Department of Obstetrics and Gynaecology, Radboudumc, Nijmegen, The Netherlands.
H E Smith *Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
F K MastrorosaBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-0579-1895
G S HoltBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
B J HoustonSchool of BioSciences, Faculty of Science, The University of Melbourne, Parkville, VIC, Australia.
P F de VriesDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboudumc, Nijmegen, The Netherlands.
B K S AlobaidiBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-2718-4826
L E BattyBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
H IsmailBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
J GreenwoodDepartment of Genetic Medicine, The Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
H ShethFoundation for Research in Genetics and Endocrinology, Institute of Human Genetics, Ahmedabad, India.ORCID http://orcid.org/0000-0001-9626-0971
A MikulasovaBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
G D N AstutiDepartment of Human Genetics, Radboud Institute for Molecular Life Sciences, Radboudumc, Nijmegen, The Netherlands.
C GilissenDepartment of Human Genetics, Radboud Institute for Molecular Life Sciences, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-1693-9699
K McElenyNewcastle Fertility Centre, The Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
H TurnerDepartment of Cellular Pathology, The Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.
J CoxheadGenomics Core Facility, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-6128-9560
S CockellBioinformatics Support Unit, Faculty of Medical Sciences New, castle University, Newcastle upon Tyne, UK.
D D M BraatDepartment of Obstetrics and Gynaecology, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-0847-3684
K FleischerDepartment of Obstetrics and Gynaecology, Radboudumc, Nijmegen, The Netherlands.
K W M D'HauwersDepartment of Urology, Radboudumc, Nijmegen, The Netherlands.
E SchaafsmaDepartment of Pathology, Radboudumc, Nijmegen, The Netherlands.
Genetics of Male Infertility Initiative (GEMINI) consortium
L NagirnajaDivision of Genetics, Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA.ORCID http://orcid.org/0000-0003-1948-2495
D F ConradDivision of Genetics, Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA.ORCID http://orcid.org/0000-0003-3828-8970
C FriedrichInstitute of Reproductive Genetics, University of Münster, Münster, Germany.
S KlieschCentre of Reproductive Medicine and Andrology, Department of Clinical and Surgical Andrology, University Hospital Münster, Münster, Germany.ORCID http://orcid.org/0000-0002-7561-4870
K I AstonDepartment of Surgery, Division of Urology, University of Utah School of Medicine, Salt Lake City, UT, USA.
A Riera-EscamillaAndrology Department, Fundació Puigvert, Universitat Autònoma de Barcelona, Instituto de Investigaciones Biomédicas Sant Pau (IIB-Sant Pau), Barcelona, Catalonia, Spain.
C KrauszDepartment of Biomedical, Experimental and Clinical Sciences "Mario Serio", University of Florence, Florence, Italy.
C Gonzaga-JaureguiRegeneron Genetics Center, Tarrytown, NY, USA.
M Santibanez-KorefBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
D J ElliottBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
L E L M VissersDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-6470-5497
F TüttelmannInstitute of Reproductive Genetics, University of Münster, Münster, Germany.ORCID http://orcid.org/0000-0003-2745-9965
M K O'BryanSchool of BioSciences, Faculty of Science, The University of Melbourne, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0001-7298-4940
L RamosDepartment of Obstetrics and Gynaecology, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-4269-013X
M J XavierBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-0709-7223
G W van der HeijdenDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-5894-7027
J A VeltmanBiosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK. joris.veltman@newcastle.ac.uk.ORCID http://orcid.org/0000-0002-3218-8250
Newcastle University · GBRadboud University Nijmegen · NLUniversity of Utah · USOregon National Primate Research Center · USNewcastle upon Tyne Hospitals NHS Foundation Trust · GBThe University of Melbourne · AUUniversidade do Porto · PTUniversity of Copenhagen · DKCentro de Genética Clínica · PTi3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto · PTNational Institute of Health Dr. Ricardo Jorge · PTPuigvert Foundation · ESUniversity of Münster · DEWashington University in St. Louis · USCornell University · USDiponegoro University · IDGenomics (United Kingdom) · GBHudson Institute of Medical Research · AUInstitute of Genetics and Hospital for Genetic Diseases · INMedical College of Wisconsin · US

Funding

Project IIIP50HD096723 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Kyle Edwin Orwig · 2019 to 2026
$15.0M
GENOMICS OF SPERMATOGENIC IMPAIRMENTR01HD078641 · NICHD · WASHINGTON UNIVERSITY · PI Kenneth Ivan Aston, DONALD F. CONRAD · 2014 to 2026
$6.3M
MODELING THE EFFECTS OF STRUCTURAL VARIATION IN GTEX DATA AND MENDELIAN DISEASER01MH101810 · NIMH · WASHINGTON UNIVERSITY · PI CONRAD, DONALD F. · 2013 to 2016
$1.3M
Biotechnology and Biological Sciences Research Council BB/S008039/1NICHD NIH HHS P50 HD096723NICHD NIH HHS R01 HD078641NIMH NIH HHS R01 MH101810Wellcome Trust 209451Wellcome Trust 209451/Z/17/Z
6 · The paper itself

Abstract

De novo mutations are known to play a prominent role in sporadic disorders with reduced fitness. We hypothesize that de novo mutations play an important role in severe male infertility and explain a portion of the genetic causes of this understudied disorder. To test this hypothesis, we utilize trio-based exome sequencing in a cohort of 185 infertile males and their unaffected parents. Following a systematic analysis, 29 of 145 rare (MAF < 0.1%) protein-altering de novo mutations are classified as possibly causative of the male infertility phenotype. We observed a significant enrichment of loss-of-function de novo mutations in loss-of-function-intolerant genes (p-value = 1.00 × 10

Indexed as

Genetic Predisposition to DiseaseLoss of Function MutationMutation, MissenseAdultAzoospermiaCase-Control StudiesCell Cycle ProteinsDNA-Binding ProteinsExomeExome SequencingGene ExpressionGene Expression ProfilingHumansMaleOligospermiaRNA-Binding ProteinsCell Cycle ProteinsDNA-Binding ProteinsRBM5 protein, humanRNA-Binding ProteinsTumor Suppressor Proteins

Identifiers

PMID35013161
PMCPMC8748898
OpenAlexW4206457317

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.