Evidence map›Paper›PMID 35012632›Full record

ArticleParasites & vectors2022

Temporal transcriptomic changes in long non-coding RNAs and messenger RNAs involved in the host immune and metabolic response during Toxoplasma gondii lytic cycle.

Sha-Sha Wang, Chun-Xue Zhou, Hany M Elsheikha, Jun-Jun He, Feng-Cai Zou, Wen-Bin Zheng, Xing-Quan Zhu, Guang-Hui Zhao

Open access · goldAbstract read
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Article in Parasites & vectors, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
7.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Sha-Sha WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Chun-Xue ZhouDepartment of Pathogen Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, 250100, Shandong, China.
Hany M ElsheikhaFaculty of Medicine and Health Sciences, School of Veterinary Medicine and Science, University of Nottingham, Loughborough, LE12 5RD, UK.
Jun-Jun HeState Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730046, Gansu, China.
Feng-Cai ZouKey Laboratory of Veterinary Public Health of Higher Education of Yunnan Province, College of Veterinary Medicine, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Wen-Bin ZhengCollege of Veterinary Medicine, Shanxi Agricultural University, Taigu, 030801, Shanxi, China.
Xing-Quan ZhuKey Laboratory of Veterinary Public Health of Higher Education of Yunnan Province, College of Veterinary Medicine, Yunnan Agricultural University, Kunming, 650201, Yunnan, China. xingquanzhu1@hotmail.com.
Guang-Hui ZhaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China. zgh083@nwsuaf.edu.cn.
Northwest A&F University · CNYunnan Agricultural University · CNLanzhou Veterinary Research Institute · CNShandong University · CNShanxi Agricultural University · CNUniversity of Nottingham · GB

Funding

Agricultural Science and Technology Innovation Program CAAS-ASTIP-2016-LVRI-03the Fund for Shanxi "1331 Project" 20211331-13the Special Research Fund of Shanxi Agricultural University for High-level Talents 2021XG001Veterinary Public Health Innovation Team of Yunnan Province 202105AE160014Yunnan Expert Workstation 202005AF150041
6 · The paper itself

Abstract

backgroundLong non-coding RNAs (lncRNAs) are important regulators of various biological and pathological processes, in particular the inflammatory response by modulating the transcriptional control of inflammatory genes. However, the role of lncRNAs in regulating the immune and inflammatory responses during infection with the protozoan parasite Toxoplasma gondii remains largely unknown.

methodsWe performed a longitudinal RNA sequencing analysis of human foreskin fibroblast (HFF) cells infected by T. gondii to identify differentially expressed long non-coding RNAs (lncRNAs) and messenger RNAs (mRNAs), and dysregulated pathways over the course of T. gondii lytic cycle. The transcriptome data were validated by qRT-PCR.

resultsRNA sequencing revealed significant transcriptional changes in the infected HFFs. A total of 697, 1234, 1499, 873, 1466, 561, 676 and 716 differentially expressed lncRNAs (DElncRNAs), and 636, 1266, 1843, 2303, 3022, 1757, 3088 and 2531 differentially expressed mRNAs (DEmRNAs) were identified at 1.5, 3, 6, 9, 12, 24, 36 and 48 h post-infection, respectively. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of DElncRNAs and DEmRNAs revealed that T. gondii infection altered the expression of genes involved in the regulation of host immune response (e.g., cytokine-cytokine receptor interaction), receptor signaling (e.g., NOD-like receptor signaling pathway), disease (e.g., Alzheimer's disease), and metabolism (e.g., fatty acid degradation).

conclusionsThese results provide novel information for further research on the role of lncRNAs in immune regulation of T. gondii infection.

Indexed as

Cells, CulturedForeskinGene Expression RegulationHumansMaleReal-Time Polymerase Chain ReactionRNA, Long NoncodingRNA, MessengerRNA, ProtozoanSequence Analysis, RNAToxoplasmaTranscriptomeRNA, Long NoncodingRNA, MessengerRNA, ProtozoanImmune responselncRNAmRNARNA-seqToxoplasma gondii

Identifiers

PMID35012632
PMCPMC8750853
OpenAlexW4205365151

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.