ArticleInternational journal of molecular sciences2022
Gene Co-Expression Analysis Reveals Transcriptome Divergence between Wild and Cultivated Sugarcane under Drought Stress.
Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 49 citations in OpenAlex.
- Multitrait Evaluation of Drought Tolerance at the Seedling Stage in Advanced Backcross Germplasm Derived from Sugarcane ×Plants (Basel, Switzerland) · 2026Article
- The chromosome-level genomes of twoHorticulture research · 2026Article
- Conserved and divergent gene regulatory networks for crop drought resistance.Nature communications · 2026Article
- Comparative transcriptome analysis of differentially expressed genes of Medicago falcata L. breeding lines response to saline-alkaline stress.BMC plant biology · 2025Article
- Enhanced Natamycin production in Streptomyces gilvosporeus through phosphate tolerance screening and transcriptome-based analysis of high-yielding mechanisms.Microbial cell factories · 2025Article
- StTCTP Positively RegulatesInternational journal of molecular sciences · 2025Article
- Improvement in genomic prediction of maize with prior gene ontology information depends on traits and environmental conditions.The plant genome · 2025Article
- Comparative transcriptomic analysis unveils candidate genes associated with sugarcane growth rate.Planta · 2024Article
- Physiological responses to drought stress of three pine species and comparative transcriptome analysis of Pinus yunnanensis var. pygmaea.BMC genomics · 2024Article
- Factors affecting the production of sugarcane yield and sucrose accumulation: suggested potential biological solutions.Frontiers in plant science · 2024Review
- Gene Co-Expression Analysis Reveals the Transcriptome Changes and Hub Genes of Fructan Metabolism in Garlic under Drought Stress.Plants (Basel, Switzerland) · 2023Article
- Transcriptome and WGCNA reveal hub genes in sugarcane tiller seedlings in response to drought stress.Scientific reports · 2023Article
- Gene co-expression network analysis identifies hub genes associated with different tolerance under calcium deficiency in two peanut cultivars.BMC genomics · 2023Article
- Ectopic over-expression of HaFT-1, a 14-3-3 protein from Haloxylon ammodendron, enhances acquired thermotolerance in transgenic Arabidopsis.Plant molecular biology · 2023Article
- Global Responses of Autopolyploid Sugarcane Badila (International journal of molecular sciences · 2023Article
- Comparative Transcriptome Analysis of Tolerant and Sensitive Genotypes of Common Bean (Plants (Basel, Switzerland) · 2023Article
- Epicuticular wax accumulation and regulation of wax pathway gene expression during bioenergy Sorghum stem development.Frontiers in plant science · 2023Article
- Transcriptome and coexpression network analysis reveals properties and candidate genes associated with grape (Frontiers in plant science · 2023Article
- WGCNA Identifies a Comprehensive and Dynamic Gene Co-Expression Network That Associates with Smut Resistance in Sugarcane.International journal of molecular sciences · 2022Article
- Integrated analysis of small RNAs, transcriptome and degradome sequencing reveal the drought stress network inFrontiers in plant science · 2022Article
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Authors and funding
11 authors at 2 institutions in 1 country.
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Abstract
Drought is the main abiotic stress that constrains sugarcane growth and production. To understand the molecular mechanisms that govern drought stress, we performed a comprehensive comparative analysis of physiological changes and transcriptome dynamics related to drought stress of highly drought-resistant (ROC22, cultivated genotype) and weakly drought-resistant (Badila, wild genotype) sugarcane, in a time-course experiment (0 h, 4 h, 8 h, 16 h and 32 h). Physiological examination reviewed that ROC22, which shows superior drought tolerance relative to Badila, has high performance photosynthesis and better anti-oxidation defenses under drought conditions. The time series dataset enabled the identification of important hubs and connections of gene expression networks. We identified 36,956 differentially expressed genes (DEGs) in response to drought stress. Of these, 15,871 DEGs were shared by the two genotypes, and 16,662 and 4423 DEGs were unique to ROC22 and Badila, respectively. Abscisic acid (ABA)-activated signaling pathway, response to water deprivation, response to salt stress and photosynthesis-related processes showed significant enrichment in the two genotypes under drought stress. At 4 h of drought stress, ROC22 had earlier stress signal transduction and specific up-regulation of the processes response to ABA, L-proline biosynthesis and MAPK signaling pathway-plant than Badila. WGCNA analysis used to compile a gene regulatory network for ROC22 and Badila leaves exposed to drought stress revealed important candidate genes, including several classical transcription factors:
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