Evidence map›Paper›PMID 35008636›Full record

ArticleInternational journal of molecular sciences2021

Search for Structural Basis of Interactions of Biogenic Amines with Human TAAR1 and TAAR6 Receptors.

Anna V Glyakina, Constantine D Pavlov, Julia V Sopova, Raul R Gainetdinov, Elena I Leonova, Oxana V Galzitskaya

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Allosteric Modulators of G Protein-Coupled Receptors.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Anna V GlyakinaInstitute of Mathematical Problems of Biology, Russian Academy of Sciences, Keldysh Institute of Applied Mathematics, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia.
Constantine D PavlovInstitute of Protein Research, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia.
Julia V SopovaInstitute of Translational Biomedicine, St. Petersburg State University, 199034 St. Petersburg, Russia.ORCID 0000-0002-7825-273X
Raul R GainetdinovInstitute of Translational Biomedicine, St. Petersburg State University, 199034 St. Petersburg, Russia.
Elena I LeonovaInstitute of Translational Biomedicine, St. Petersburg State University, 199034 St. Petersburg, Russia.
Oxana V GalzitskayaInstitute of Protein Research, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia.ORCID 0000-0002-3962-1520
St Petersburg University · RUInstitute of Mathematical Problems of Biology · RUInstitute of Protein Research · RUInstitute of Theoretical and Experimental Biophysics · RU

Funding

Russian Science Foundation 19-75-30008
6 · The paper itself

Abstract

The identification and characterization of ligand-receptor binding sites are important for drug development. Trace amine-associated receptors (TAARs, members of the class A GPCR family) can interact with different biogenic amines and their metabolites, but the structural basis for their recognition by the TAARs is not well understood. In this work, we have revealed for the first time a group of conserved motifs (fingerprints) characterizing TAARs and studied the docking of aromatic (β-phenylethylamine, tyramine) and aliphatic (putrescine and cadaverine) ligands, including gamma-aminobutyric acid, with human TAAR1 and TAAR6 receptors. We have identified orthosteric binding sites for TAAR1 (Asp68, Asp102, Asp284) and TAAR6 (Asp78, Asp112, Asp202). By analyzing the binding results of 7500 structures, we determined that putrescine and cadaverine bind to TAAR1 at one site, Asp68 + Asp102, and to TAAR6 at two sites, Asp78 + Asp112 and Asp112 + Asp202. Tyramine binds to TAAR6 at the same two sites as putrescine and cadaverine and does not bind to TAAR1 at the selected Asp residues. β-Phenylethylamine and gamma-aminobutyric acid do not bind to the TAAR1 and TAAR6 receptors at the selected Asp residues. The search for ligands targeting allosteric and orthosteric sites of TAARs has excellent pharmaceutical potential.

Indexed as

Amino Acid SequenceAnimalsBinding SitesBiogenic AminesCadaverineCell Cycle ProteinsFishesgamma-Aminobutyric AcidHumansLigandsMicePhenethylaminesPutrescineReceptors, G-Protein-CoupledTrace Amine-Associated ReceptorsTyramineBiogenic AminesCadaverineCell Cycle Proteinsgamma-Aminobutyric AcidLigandsphenethylaminePhenethylaminesPutrescineReceptors, G-Protein-CoupledTAAR6 protein, humanTrace Amine-Associated ReceptorsTyraminecadaverinegamma-aminobutyric acid (GABA)putrescineTAAR1TAAR6trace amine receptorstrace aminestyramineβ-phenylethylamine

Identifiers

PMID35008636
PMCPMC8745718
OpenAlexW4200317736

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.