Evidence map›Paper›PMID 35006368›Full record

ArticleRice (New York, N.Y.)2022

Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease.

Kuan-Lin Lo, Yi-Nian Chen, Min-Yu Chiang, Mei-Chun Chen, Jerome P Panibe, Chung-Chun Chiu, Lu-Wei Liu, Liang-Jwu Chen, Chun-Wei Chen, Wen-Hsiung Li and 1 more

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Kuan-Lin LoDepartment of Agronomy, National Chung Hsing University, Taichung, Taiwan.
Yi-Nian ChenDivision of Plant Pathology, Taiwan Agriculture Research Institute, Taichung, Taiwan.
Min-Yu ChiangDepartment of Agronomy, National Chung Hsing University, Taichung, Taiwan.
Mei-Chun ChenDivision of Plant Pathology, Taiwan Agriculture Research Institute, Taichung, Taiwan.
Jerome P PanibeInstitute of Molecular and Cellular Biology, National Tsing Hua University, Hsinchu, Taiwan.
Chung-Chun ChiuDepartment of Agronomy, National Chung Hsing University, Taichung, Taiwan.
Lu-Wei LiuDepartment of Agronomy, National Chung Hsing University, Taichung, Taiwan.
Liang-Jwu ChenInstitute of Molecular Biology, National Chung Hsing University, Taichung, Taiwan.
Chun-Wei ChenDivision of Plant Pathology, Taiwan Agriculture Research Institute, Taichung, Taiwan.
Wen-Hsiung LiBiodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan.
Chang-Sheng WangDepartment of Agronomy, National Chung Hsing University, Taichung, Taiwan. wangchansen@nchu.edu.tw.ORCID http://orcid.org/0000-0003-3627-6714
National Chung Hsing University · TWNational Tsing Hua University · TWUniversity of Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice blast, one of the most destructive epidemic diseases, annually causes severe losses in grain yield worldwide. To manage blast disease, breeding resistant varieties is considered a more economic and environment-friendly strategy than chemical control. For breeding new resistant varieties, natural germplasms with broad-spectrum resistance are valuable resistant donors, but the number is limited. Therefore, artificially induced mutants are an important resource for identifying new broad-spectrum resistant (R) genes/loci. To pursue this approach, we focused on a broad-spectrum blast resistant rice mutant line SA0169, which was previously selected from a sodium azide induced mutation pool of TNG67, an elite japonica variety. We found that SA0169 was completely resistant against the 187 recently collected blast isolates and displayed durable resistance for almost 20 years. Linkage mapping and QTL-seq analysis indicated that a 1.16-Mb region on chromosome 6 (Pi169-6(t)) and a 2.37-Mb region on chromosome 11 (Pi169-11(t)) conferred the blast resistance in SA0169. Sequence analysis and genomic editing study revealed 2 and 7 candidate R genes in Pi169-6(t) and Pi169-11(t), respectively. With the assistance of mapping results, six blast and bacterial blight double resistant lines, which carried Pi169-6(t) and/or Pi169-11(t), were established. The complementation of Pi169-6(t) and Pi169-11(t), like SA0169, showed complete resistance to all tested isolates, suggesting that the combined effects of these two genomic regions largely confer the broad-spectrum resistance of SA0169. The sodium azide induced mutant SA0169 showed broad-spectrum and durable blast resistance. The broad resistance spectrum of SA0169 is contributed by the combined effects of two R regions, Pi169-6(t) and Pi169-11(t). Our study increases the understanding of the genetic basis of the broad-spectrum blast resistance induced by sodium azide mutagenesis, and lays a foundation for breeding new rice varieties with durable resistance against the blast pathogen.

Indexed as

Broad-spectrum resistanceQTL-seq mappingRice blastSodium azide mutant

Identifiers

PMID35006368
PMCPMC8748607
OpenAlexW4206630994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.