ArticleFrontiers in plant science2021
Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization.
Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 31 citations in OpenAlex.
- A haplotype-based approach to explore genotype-by-environment interactions for barley yield.The plant genome · 2026Article
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- Large scale wheat data integration improves genomic prediction accuracy with the potential to facilitate international breeding collaborations.Communications biology · 2026Article
- OzBarley: A genetic and phenotypic data resource capturing the Australian barley breeding history.Scientific data · 2026Article
- Exploring standing genetic variation for barley leaf rust resistance in Australian breeding panel.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Combining two high-density QTL maps with a reference genome to identify candidate genes for morphology, yield, and biotic resistance in faba bean (Frontiers in plant science · 2026Article
- QTLs for heat-induced stomatal anatomy underpin gas exchange variation in field-grown wheat.Frontiers in plant science · 2026Article
- Genome-Wide, High-Density Genotyping Approaches for Plant Germplasm Characterisation (Methods and Applications).International journal of molecular sciences · 2025Review
- Phenotyping the hidden half: combining UAV phenotyping and machine learning to predict barley root traits in the field.Journal of experimental botany · 2025Article
- Prediction of Australian wheat genotype by environment interactions and mega-environments.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Haplotype-based insights into seminal root angle in barley.The plant genome · 2025Article
- Foliar disease resistance phenomics of fungal pathogens: image-based approaches for mapping quantitative resistance in cereal germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Genomic analysis of two all-stage stripe rust resistance genes in the Vavilov wheat landrace AGG40807WHEA1.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- A large-scale multi-environment study dissecting adult-plant resistance haplotypes for stripe rust resistance in Australian wheat breeding populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Wheat improvement through advances in single nucleotide polymorphism (SNP) detection and genotyping with a special emphasis on rust resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- Review
- Characterizing stay-green in barley across diverse environments: unveiling novel haplotypes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genotyping of SNPs in bread wheat at reduced cost from pooled experiments and imputation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Optimising desired gain indices to maximise selection response.Frontiers in plant science · 2024Article
- Wheat Water-Soluble Carbohydrate Remobilisation under Water Deficit byCurrent issues in molecular biology · 2023Article
Corrections and comments
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Authors and funding
13 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Array-based single nucleotide polymorphism (SNP) genotyping platforms have low genotype error and missing data rates compared to genotyping-by-sequencing technologies. However, design decisions used to create array-based SNP genotyping assays for both research and breeding applications are critical to their success. We describe a novel approach applicable to any animal or plant species for the design of cost-effective imputation-enabled SNP genotyping arrays with broad utility and demonstrate its application through the development of the Illumina Infinium Wheat Barley 40K SNP array Version 1.0. We show that the approach delivers high quality and high resolution data for wheat and barley, including when samples are jointly hybridised. The new array aims to maximally capture haplotypic diversity in globally diverse wheat and barley germplasm while minimizing ascertainment bias. Comprising mostly biallelic markers that were designed to be species-specific and single-copy, the array permits highly accurate imputation in diverse germplasm to improve the statistical power of genome-wide association studies (GWAS) and genomic selection. The SNP content captures tetraploid wheat (A- and B-genome) and
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.