Evidence map›Paper›PMID 35002191›Full record

ArticleAdvances in neural information processing systems2020

Point process models for sequence detection in high-dimensional neural spike trains.

Alex H Williams, Anthony Degleris, Yixin Wang, Scott W Linderman

Open access · greenAbstract read
In one paragraph

Article in Advances in neural information processing systems, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Deep Continuous-Time State-Space Models for Marked Event Sequences.Advances in neural information processing systems · 2025
    Article
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  10. Article
  11. How our understanding of memory replay evolves.Journal of neurophysiology · 2023
    Review
  12. Review
  13. Review
  14. The Impact of Multivesicular Release on the Transmission of Sensory Information by Ribbon Synapses.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  15. Article
  16. Statistical neuroscience in the single trial limit.Current opinion in neurobiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Alex H WilliamsDepartment of Statistics, Stanford University, Stanford, CA 94305.
Anthony DeglerisDepartment of Electrical Engineering, Stanford University, Stanford, CA 94305.
Yixin WangDepartment of Statistics, Columbia University, New York NY 10027.
Scott W LindermanDepartment of Statistics, Stanford University, Stanford, CA 94305.
Stanford University · USColumbia University · US

Funding

Towards a Unified Framework for Dopamine Signaling in the StriatumU19NS113201 · NINDS · HARVARD MEDICAL SCHOOL · PI SABATINI, BERNARDO L · 2019 to 2023
$18.7M
Neural representation of mating partners by male C. elegansR01NS113119 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI LINDERMAN, SCOTT WARREN, SAMUEL, ARAVINTHAN D. · 2019 to 2023
$3.3M
Tracking Changes in High-Dimensional Circuit Behaviors over Long-Term Neural RecordingsF32MH122998 · NIMH · STANFORD UNIVERSITY · PI WILLIAMS, ALEXANDER HENRY · 2020 to 2021
$127k
NIMH NIH HHS F32 MH122998NINDS NIH HHS R01 NS113119NINDS NIH HHS U19 NS113201
6 · The paper itself

Abstract

Sparse sequences of neural spikes are posited to underlie aspects of working memory [1], motor production [2], and learning [3, 4]. Discovering these sequences in an unsupervised manner is a longstanding problem in statistical neuroscience [5-7]. Promising recent work [4, 8] utilized a convolutive nonnegative matrix factorization model [9] to tackle this challenge. However, this model requires spike times to be discretized, utilizes a sub-optimal least-squares criterion, and does not provide uncertainty estimates for model predictions or estimated parameters. We address each of these shortcomings by developing a point process model that characterizes fine-scale sequences at the level of individual spikes and represents sequence occurrences as a small number of marked events in continuous time. This ultra-sparse representation of sequence events opens new possibilities for spike train modeling. For example, we introduce learnable time warping parameters to model sequences of varying duration, which have been experimentally observed in neural circuits [10]. We demonstrate these advantages on experimental recordings from songbird higher vocal center and rodent hippocampus.

Identifiers

PMID35002191
PMCPMC8734964
OpenAlexW3091804413

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.