Evidence map›Paper›PMID 35001423›Full record

ArticleMagnetic resonance in medicine2022

Estimation of the capillary level input function for dynamic contrast-enhanced MRI of the breast using a deep learning approach.

Jonghyun Bae, Zhengnan Huang, Florian Knoll, Krzysztof Geras, Terlika Pandit Sood, Li Feng, Laura Heacock, Linda Moy, Sungheon Gene Kim

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Feasibility of measuring blood-brain barrier permeability using ultra-short echo time radial magnetic resonance imaging.Journal of neuroimaging : official journal of the American Society of Neuroimaging
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jonghyun BaeVilcek Institute of Graduate Biomedical Science, New York University School of Medicine, New York, New York, USA.ORCID 0000-0002-3987-6603
Zhengnan HuangVilcek Institute of Graduate Biomedical Science, New York University School of Medicine, New York, New York, USA.
Florian KnollCenter for Biomedical Imaging, Radiology, New York University School of Medicine, New York, New York, USA.ORCID 0000-0001-5357-8656
Krzysztof GerasCenter for Biomedical Imaging, Radiology, New York University School of Medicine, New York, New York, USA.
Terlika Pandit SoodCenter for Biomedical Imaging, Radiology, New York University School of Medicine, New York, New York, USA.
Li FengBiomedical Engineering and Imaging Institute and Department of Radiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.ORCID 0000-0002-8692-7645
Laura HeacockCenter for Biomedical Imaging, Radiology, New York University School of Medicine, New York, New York, USA.
Linda MoyVilcek Institute of Graduate Biomedical Science, New York University School of Medicine, New York, New York, USA.
Sungheon Gene KimDepartment of Radiology, Weill Cornell Medical College, New York, New York, USA.ORCID 0000-0002-6288-0678

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Disparities in COVID Disease Severity and Outcomes in New York CityUL1TR002384 · NCATS · WEILL MEDICAL COLL OF CORNELL UNIV · PI JULIANNE L IMPERATO-MCGINLEY · 2017 to 2026
$86.2M
TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Hersh Chandarana · 2014 to 2026
$19.3M
DCE MRI Study for Breast Cancer.R01CA160620 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI KIM, SUNGHEON GENE · 2012 to 2023
$5.4M
Gradient-Echo Spectroscopic Imaging Study of Saturated Fat and Breast CancerR01CA219964 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI KIM, SUNGHEON GENE, MOY, LINDA · 2018 to 2022
$2.3M
Learning an Optimized Variational Network for Medical Image ReconstructionR01EB024532 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI JOHNSON, PATRICIA MARGARET, KNOLL, FLORIAN · 2018 to 2021
$1.8M
Rapid Motion-Robust and Easy-to-Use Dynamic Contrast-Enhanced MRI for Liver Perfusion QuantificationR01EB030549 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI FENG, LI · 2021 to 2024
$1.7M
Diffusion MRI of Treatment Response for De-escalation of Radiation TherapyUH3CA228699 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI KIM, SUNGHEON GENE · 2021 to 2023
$1.2M
Diffusion MRI of Treatment Response for De-escalation of Radiation TherapyUG3CA228699 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI KIM, SUNGHEON GENE · 2019 to 2020
$807k
Development of Multi-Compartment MR-Fingerprinting for Subvoxel Estimation of Quantitative Tissue BiomarkersR21EB027241 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ASSLAENDER, JAKOB, KNOLL, FLORIAN · 2019 to 2020
$462k
NCATS NIH HHS UL1 TR001873NCATS NIH HHS UL1 TR002384NCI NIH HHS R01 CA160620NCI NIH HHS R01 CA219964NCI NIH HHS UG3 CA228699NCI NIH HHS UH3 CA228699NIBIB NIH HHS P41 EB017183NIBIB NIH HHS R01 EB024532NIBIB NIH HHS R01 EB030549NIBIB NIH HHS R21 EB027241
6 · The paper itself

Abstract

purposeTo develop a deep learning approach to estimate the local capillary-level input function (CIF) for pharmacokinetic model analysis of DCE-MRI.

methodsA deep convolutional network was trained with numerically simulated data to estimate the CIF. The trained network was tested using simulated lesion data and used to estimate voxel-wise CIF for pharmacokinetic model analysis of breast DCE-MRI data using an abbreviated protocol from women with malignant (n = 25) and benign (n = 28) lesions. The estimated parameters were used to build a logistic regression model to detect the malignancy.

resultThe pharmacokinetic parameters estimated using the network-predicted CIF from our breast DCE data showed significant differences between the malignant and benign groups for all parameters. Testing the diagnostic performance with the estimated parameters, the conventional approach with arterial input function (AIF) showed an area under the curve (AUC) between 0.76 and 0.87, and the proposed approach with CIF demonstrated similar performance with an AUC between 0.79 and 0.81.

conclusionThis study shows the feasibility of estimating voxel-wise CIF using a deep neural network. The proposed approach could eliminate the need to measure AIF manually without compromising the diagnostic performance to detect the malignancy in the clinical setting.

Indexed as

Breast NeoplasmsDeep LearningAlgorithmsContrast MediaFemaleHumansMagnetic Resonance ImagingReproducibility of ResultsContrast Mediaarterial input functionbreast cancercapillary input functiondeep learningdynamic contrast enhanced MRI

Identifiers

PMID35001423
PMCPMC8852816

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.