Evidence map›Paper›PMID 34999365›Full record

ArticleForensic science international2022

SmartAmp method can rapidly detect SARS-CoV-2 in dead bodies.

Sayaka Nagasawa, Aika Mori, Yuichiro Hirata, Ayumi Motomura, Namiko Ishii, Keisuke Okaba, Kie Horioka, Yohsuke Makino, Makoto Nakajima, Suguru Torimitsu and 10 more

Abstract read
In one paragraph

Article in Forensic science international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Sayaka NagasawaDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan. Electronic address: nagasawa.s@chiba-u.jp.
Aika MoriDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan.
Yuichiro HirataDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan.
Ayumi MotomuraDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, School of Medicine, International University of Health and Welfare, Kozunomori 4-3, Narita city, Chiba 286-8686, Japan.
Namiko IshiiDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, School of Medicine, International University of Health and Welfare, Kozunomori 4-3, Narita city, Chiba 286-8686, Japan.
Keisuke OkabaDepartment of Forensic Medicine, School of Medicine, International University of Health and Welfare, Kozunomori 4-3, Narita city, Chiba 286-8686, Japan.
Kie HoriokaDepartment of Forensic Medicine, School of Medicine, International University of Health and Welfare, Kozunomori 4-3, Narita city, Chiba 286-8686, Japan.
Yohsuke MakinoDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Makoto NakajimaDepartment of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Suguru TorimitsuDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Rutsuko YamaguchiDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Go InokuchiDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Fumiko ChibaDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Yumi HoshiokaDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan.
Naoki SaitoDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan.
Maiko YoshidaDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan.
Daisuke YajimaDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, School of Medicine, International University of Health and Welfare, Kozunomori 4-3, Narita city, Chiba 286-8686, Japan.
Shinji AkitomiDepartment of Medical Crisis Management, Medical Corporation Ioukai, Higasisayamagaoka 5-2753, Tokorozawa City, Saitama 330-0854, Japan; Japan Medical Association Research Institute, Komagome 2-28-16, Bunkyo-ku, Tokyo 113-8621, Japan.
Hirotaro IwaseDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan; Department of Forensic Medicine, Graduate School of Medicine, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Hisako SaitohDepartment of Legal Medicine, Graduate School of Medicine, Chiba University, Inohana 1-8-1,Chuo-ku, Chiba city, Chiba, 260-8670, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rapid and accurate detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in dead bodies is essential to prevent infection among those working with dead bodies. This study focused on the Smart Amplification (SmartAmp) method, which has a short examination time (approximately an hour), is simple to perform, and demonstrates high specificity and sensitivity. This method has already been used for clinical specimens; however, its effectiveness in dead bodies has not been reported. This study examined the SmartAmp method using 11 autopsies or postmortem needle biopsies performed from January to May, 2021 (of these, five cases tested positive for SARS-CoV-2 by quantitative real-time polymerase chain reaction (qRT-PCR) and six cases tested negative). Swab samples were collected from the nasopharynx, oropharynx, or anus and the SmartAmp and qRT-PCR results were compared. For the nasopharynx and oropharynx samples, the same results were obtained for both methods in all cases; however, for the anal swabs, there was one case that was positive according to qRT-PCR but negative according to the SmartAmp method. The SmartAmp method may therefore be less sensitive than qRT-PCR and results may differ in specimens with a low viral load, such as anal swabs. However, in the nasopharynx and oropharynx specimens, which are normally used for testing, the results were the same using each method, suggesting that the SmartAmp method is useful in dead bodies. In the future, the SmartAmp method may be applied not only during autopsies, but also in various situations where dead bodies are handled.

Indexed as

CadaverSARS-CoV-2Anal CanalCOVID-19COVID-19 Nucleic Acid TestingHumansNasopharynxOropharynxRNA, ViralRNA, ViralAutopsyRapid testSARS-CoV-2SmartAmp methodSwab test

Identifiers

PMID34999365
PMCPMC8701773

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.