Evidence map›Paper›PMID 34997791›Full record

ArticleProtein science : a publication of the Protein Society2022

Structural investigation on SPI-6-associated Salmonella typhimurium VirG-like stress protein that promotes pathogen survival in macrophages.

Shilpa Ray, Nishant Kumar Pandey, Gajraj Singh Kushwaha, Susmita Das, Akshay Kumar Ganguly, Nimi Vashi, Dhiraj Kumar, Mrutyunjay Suar, Neel Sarovar Bhavesh

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Shilpa RaySchool of Biotechnology, Kalinga Institute of Industrial Technology (KIIT), Deemed to be University, Bhubaneswar, India.ORCID 0000-0002-9940-7366
Nishant Kumar PandeySchool of Biotechnology, Kalinga Institute of Industrial Technology (KIIT), Deemed to be University, Bhubaneswar, India.
Gajraj Singh KushwahaTranscription Regulation Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.ORCID 0000-0002-1663-2497
Susmita DasSchool of Biotechnology, Kalinga Institute of Industrial Technology (KIIT), Deemed to be University, Bhubaneswar, India.ORCID 0000-0001-6916-9523
Akshay Kumar GangulyTranscription Regulation Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.ORCID 0000-0002-7456-3266
Nimi VashiCellular Immunology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.ORCID 0000-0002-1930-9206
Dhiraj KumarCellular Immunology Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.ORCID 0000-0001-7578-2930
Mrutyunjay SuarSchool of Biotechnology, Kalinga Institute of Industrial Technology (KIIT), Deemed to be University, Bhubaneswar, India.ORCID 0000-0003-4815-5477
Neel Sarovar BhaveshTranscription Regulation Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.ORCID 0000-0002-7248-4978
International Centre for Genetic Engineering and Biotechnology · INKIIT University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteric microbial pathogenesis, remarkably a complex process, is achieved by virulence factors encoded by genes located within regions of the bacterial genome termed pathogenicity islands. Salmonella pathogenicity islands (SPI) encodes proteins, that are essential virulence determinants for pathogen colonization and virulence. In addition to the well-characterized SPI-1 and SPI-2 proteins, which are required for bacterial invasion and intracellular replication, respectively, SPI-6 (formerly known as Salmonella enterica centisome 7 island [SCI]) encoding proteins are also known to play pivotal role in Salmonella pathogenesis. However, the underlying molecular mechanism of these proteins remained elusive. To gain molecular insights into SPI-6-associated proteins, in this study, a SPI-6 Salmonella typhimurium VirG-like protein (STV) is characterized using interdisciplinary experimental approaches including X-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy and infection assays. The high-resolution crystal structure, determined by the single-wavelength anomalous dispersion (SAD) method, reveals that STV belongs to the LTxxQ motif family. Solution-state NMR spectroscopy studies reveal that STV form a dimer involving interconnected helices. Interestingly, functional studies show that STV influence pathogen persistence inside macrophages in vitro at later stages of infection. Altogether, our findings suggest that STV, a member of the LTxxQ stress protein family, modulates bacterial survival mechanism in macrophages through SPI-1 and SPI-2 genes, respectively.

Indexed as

Bacterial ProteinsGenomic IslandsMacrophagesSalmonella typhimuriumGene Expression Regulation, BacterialHeat-Shock ProteinsVirulence FactorsBacterial ProteinsHeat-Shock ProteinsVirulence Factorscrystal structureLTxxQ family proteinsalmonellaSPI-6stress proteinT6SS

Identifiers

PMID34997791
PMCPMC8927873
OpenAlexW4205527895

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.