Evidence map›Paper›PMID 34997319›Full record

ArticleArchives of virology2022

Evidence for a non-fusogenic aquareovirus encoding a transmembrane protein.

Fei Yu, Siyao Xia, Hao Wang, Kai Hao, Liqun Lu, Zhe Zhao

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Fei YuDepartment of Marine Biology, College of Oceanography, Hohai University, Nanjing, 210098, People's Republic of China.
Siyao XiaDepartment of Marine Biology, College of Oceanography, Hohai University, Nanjing, 210098, People's Republic of China.
Hao WangNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, 201306, People's Republic of China.
Kai HaoDepartment of Marine Biology, College of Oceanography, Hohai University, Nanjing, 210098, People's Republic of China.
Liqun LuNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, 201306, People's Republic of China. lqlv@shou.edu.cn.
Zhe ZhaoDepartment of Marine Biology, College of Oceanography, Hohai University, Nanjing, 210098, People's Republic of China. zhezhao@hhu.edu.cn.ORCID http://orcid.org/0000-0002-1124-791X
Hohai University · CNShanghai Ocean University · CN

Funding

Fundamental Research Funds for the Central Universities 2019B05614National Natural Science Foundation of China 32002433Natural Science Foundation of Jiangsu Province BK20200522
6 · The paper itself

Abstract

Fusogenic aquareoviruses can induce host cell-cell fusion, forming syncytia via a fusion-associated transmembrane protein. However, there have been very few reports on non-fusogenic aquareoviruses encoding a membrane-associated protein. Previously, sequence-based analysis has indicated that grass carp reovirus strain 104 (GCRV-104), a non-fusogenic aquareovirus, encodes the proteins VP8 (nt 36-263) and VP15 (nt 400-822) in its genome segment S11. Here, we employed a liquid chromatography-tandem mass spectrometry assay to experimentally annotate small coding genes in the GCRV-104 genome and confirmed that segment S11 indeed functions as bicistronic mRNA. Notably, some additional polypeptides were identified that are encoded upstream of the VP15 open reading frame (ORF), which suggests that the virus uses a novel ORF with a non-AUG initiator codon, tentatively named VP15L (nt 274-822), which is longer than the previous putative VP15 ORF. Furthermore, a transmembrane domain was identified at the N-terminus of VP15L, but its function is unclear. Thus, the aquareovirus GCRV-104 potentially encodes a transmembrane protein, which opens a new perspective on the properties of viral proteins and the pathogenesis of this non-fusogenic reovirus.

Indexed as

CarpsFish DiseasesReoviridaeReoviridae InfectionsAnimalsGenome, ViralMembrane ProteinsRNA, ViralMembrane ProteinsRNA, Viral

Identifiers

PMID34997319
OpenAlexW4205957829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.