Evidence map›Paper›PMID 34996998›Full record

ArticleScientific reports2022

Spontaneous mutation rate estimates for the principal malaria vectors Anopheles coluzzii and Anopheles stephensi.

Iliyas Rashid, Melina Campos, Travis Collier, Marc Crepeau, Allison Weakley, Hans Gripkey, Yoosook Lee, Hanno Schmidt, Gregory C Lanzaro

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Iliyas Rashid *Vector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, UC Davis, 1089 Veterinary Medicine Dr, 4225 VM3B, Davis, CA, 95616, USA.
Melina Campos *Vector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, UC Davis, 1089 Veterinary Medicine Dr, 4225 VM3B, Davis, CA, 95616, USA.
Travis CollierVector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, UC Davis, 1089 Veterinary Medicine Dr, 4225 VM3B, Davis, CA, 95616, USA.
Marc CrepeauVector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, UC Davis, 1089 Veterinary Medicine Dr, 4225 VM3B, Davis, CA, 95616, USA.
Allison WeakleyDepartment of ChEM-H Operations, Stanford University, 450 Serra Mall, Stanford, CA, 94305, USA.
Hans GripkeyVector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, UC Davis, 1089 Veterinary Medicine Dr, 4225 VM3B, Davis, CA, 95616, USA.
Yoosook LeeFlorida Medical Entomology Laboratory, University of Florida, 200 9th St SE, Vero Beach, FL, 32962, USA.
Hanno SchmidtAnthropology, Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg University of Mainz, Saarstraße 21, 55122, Mainz, Germany.
Gregory C LanzaroVector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, UC Davis, 1089 Veterinary Medicine Dr, 4225 VM3B, Davis, CA, 95616, USA. gclanzaro@ucdavis.edu.
Vector Oncology (United States) · USInstitute for Stem Cell Biology and Regenerative Medicine · INJohannes Gutenberg University Mainz · DEStanford University · USUniversity of California, Davis · USUniversity of Florida · US

Funding

Open Philanthropy Project A20-3521
6 · The paper itself

Abstract

Using high-depth whole genome sequencing of F0 mating pairs and multiple individual F1 offspring, we estimated the nuclear mutation rate per generation in the malaria vectors Anopheles coluzzii and Anopheles stephensi by detecting de novo genetic mutations. A purpose-built computer program was employed to filter actual mutations from a deep background of superficially similar artifacts resulting from read misalignment. Performance of filtering parameters was determined using software-simulated mutations, and the resulting estimate of false negative rate was used to correct final mutation rate estimates. Spontaneous mutation rates by base substitution were estimated at 1.00 × 10

Indexed as

AnimalsAnophelesFemaleHumansInsect ProteinsMalariaMaleMosquito VectorsMutation RateWhole Genome SequencingInsect Proteins

Identifiers

PMID34996998
PMCPMC8742016
OpenAlexW4205133119

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.