Evidence map›Paper›PMID 34996906›Full record

ArticleScientific reports2022

Complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing.

Surendra Neupane, Sylvia I Bonilla, Andrew M Manalo, Kirsten S Pelz-Stelinski

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Time-Course Gene Expression of 'Microorganisms · 2025
    Article
  2. Article
  3. Analysis of globalMicrobial genomics · 2024
    Article
  4. Pan-Genome Analysis ofInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Complete De Novo Assembly ofInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. The phylogeny and distribution ofFrontiers in cellular and infection microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Surendra Neupane *Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Sylvia I Bonilla *Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Andrew M ManaloEntomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Kirsten S Pelz-StelinskiEntomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA. pelzstelinski@ufl.edu.
Florida Department of Citrus · USUniversity of Florida · US

Funding

Defense Advanced Research Projects Agency D19AP00013
6 · The paper itself

Abstract

Wolbachia, a gram-negative [Formula: see text]-proteobacterium, is an endosymbiont found in some arthropods and nematodes. Diaphorina citri Kuwayama, the vector of 'Candidatus Liberibacter asiaticus' (CLas), are naturally infected with a strain of Wolbachia (wDi), which has been shown to colocalize with the bacteria pathogens CLas, the pathogen associated with huanglongbing (HLB) disease of citrus. The relationship between wDi and CLas is poorly understood in part because the complete genome of wDi has not been available. Using high-quality long-read PacBio circular consensus sequences, we present the largest complete circular wDi genome among supergroup-B members. The assembled circular chromosome is 1.52 megabases with 95.7% genome completeness with contamination of 1.45%, as assessed by checkM. We identified Insertion Sequences (ISs) and prophage genes scattered throughout the genomes. The proteins were annotated using Pfam, eggNOG, and COG that assigned unique domains and functions. The wDi genome was compared with previously sequenced Wolbachia genomes using pangenome and phylogenetic analyses. The availability of a complete circular chromosome of wDi will facilitate understanding of its role within the insect vector, which may assist in developing tools for disease management. This information also provides a baseline for understanding phylogenetic relationships among Wolbachia of other insect vectors.

Indexed as

Chromosomes, BacterialGenes, BacterialGenome, BacterialWhole Genome SequencingAnimalsCell LineDNA, BacterialDNA, CircularHemipteraPhylogenySequence Analysis, DNASymbiosisWolbachiaDNA, BacterialDNA, Circular

Identifiers

PMID34996906
PMCPMC8741817
OpenAlexW4206064398

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.