Evidence map›Paper›PMID 34996347›Full record

Trial reportBMC microbiology2022

Increased circulating butyrate and ursodeoxycholate during probiotic intervention in humans with type 2 diabetes.

Paul J McMurdie, Magdalena K Stoeva, Nicholas Justice, Madeleine Nemchek, Christian M K Sieber, Surabhi Tyagi, Jessica Gines, Connor T Skennerton, Michael Souza, Orville Kolterman and 1 more

Registry-linked trialOpen access · goldAbstract readRandomized Controlled Trial
In one paragraph

Trial report in BMC microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03893422 (An Placebo-Controlled Clinical Nutrition Study to Evaluate the Metabolic Effects of Two Medical Food Products in Subjects With Type 2 Diabetes Treated With Diet and Exercise Alone or in Combination With Metformin ± Sulfonylurea), which is not on this map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03893422 nacompletednot on this map

An Placebo-Controlled Clinical Nutrition Study to Evaluate the Metabolic Effects of Two Medical Food Products in Subjects With Type 2 Diabetes Treated With Diet and Exercise Alone or in Combination With Metformin ± Sulfonylurea

TypeinterventionalSponsorPendulum TherapeuticsRan2017 to 2018Enrolled76ConditionsType 2 Diabetes MellitusArmsWB-010, WB-011, Placebo
3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Probiotics,Metabolism open · 2025
    Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Therapeutic Potential ofInternational journal of endocrinology · 2025
    Article
  15. Review
  16. Foods (Basel, Switzerland) · 2024
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Paul J McMurdiePendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA. paul.mcmurdie@pendulum.co.ORCID 0000-0001-8879-3954
Magdalena K StoevaPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0002-6974-6009
Nicholas JusticePendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0003-0124-2119
Madeleine NemchekPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0002-8279-4021
Christian M K SieberPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0002-9560-0281
Surabhi TyagiPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0002-1578-6777
Jessica GinesPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.
Connor T SkennertonPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0003-1320-4873
Michael SouzaPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0003-0370-8189
Orville KoltermanPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0002-9306-1288
John EidPendulum Therapeutics, Inc, 933 20th Street, San Francisco, CA, 94107, USA.ORCID 0000-0002-2099-8344
Fulcrum Therapeutics (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAn increasing body of evidence implicates the resident gut microbiota as playing a critical role in type 2 diabetes (T2D) pathogenesis. We previously reported significant improvement in postprandial glucose control in human participants with T2D following 12-week administration of a 5-strain novel probiotic formulation ('WBF-011') in a double-blind, randomized, placebo controlled setting (NCT03893422). While the clinical endpoints were encouraging, additional exploratory measurements were needed in order to link the motivating mechanistic hypothesis - increased short-chain fatty acids - with markers of disease.

resultsHere we report targeted and untargeted metabolomic measurements on fasting plasma (n = 104) collected at baseline and end of intervention. Butyrate and ursodeoxycholate increased among participants randomized to WBF-011, along with compelling trends between butyrate and glycated haemoglobin (HbA1c). In vitro monoculture experiments demonstrated that the formulation's C. butyricum strain efficiently synthesizes ursodeoxycholate from the primary bile acid chenodeoxycholate during butyrogenic growth. Untargeted metabolomics also revealed coordinated decreases in intermediates of fatty acid oxidation and bilirubin, potential secondary signatures for metabolic improvement. Finally, improvement in HbA1c was limited almost entirely to participants not using sulfonylurea drugs. We show that these drugs can inhibit growth of formulation strains in vitro.

conclusionTo our knowledge, this is the first description of an increase in circulating butyrate or ursodeoxycholate following a probiotic intervention in humans with T2D, adding support for the possibility of a targeted microbiome-based approach to assist in the management of T2D. The efficient synthesis of UDCA by C. butyricum is also likely of interest to investigators of its use as a probiotic in other disease settings. The potential for inhibitory interaction between sulfonylurea drugs and gut microbiota should be considered carefully in the design of future studies.

Indexed as

Bile Acids and SaltsBlood GlucoseButyratesClostridium butyricumDiabetes Mellitus, Type 2Fatty Acids, VolatileFecesGastrointestinal MicrobiomeGlycated HemoglobinHumansMetabolomicsProbioticsSulfonylurea CompoundsUrsodeoxycholic AcidBile Acids and SaltsBlood GlucoseButyratesFatty Acids, VolatileGlycated HemoglobinSulfonylurea CompoundsUrsodeoxycholic AcidAkkermansia muciniphilaAnaerobutyricum halliiBile acidsButyrateClostridium butyricumMetabolomicsShort-chain fatty acidsSulfonylureaType 2 diabetesUrsodeoxycholate

Identifiers

PMID34996347
PMCPMC8742391
OpenAlexW4205307918

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.