ArticleThe plant genome2022
Salt stress responses and SNP-based phylogenetic analysis of Thai rice cultivars.
Article in The plant genome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed.
- Article
- FScientific reports · 2025Article
- Effects of Salt Stress at the Booting Stage of Grain Development on Physiological Responses, Starch Properties, and Starch-Related Gene Expression in Rice (Plants (Basel, Switzerland) · 2025Article
- Profiling of Key Hub Genes Using a Two-State Weighted Gene Co-Expression Network of 'Jao Khao' Rice under Soil Salinity Stress Based on Time-Series Transcriptome Data.International journal of molecular sciences · 2024Article
- Association of a SpecificInternational journal of molecular sciences · 2024Article
- Comparative quantitative trait loci analysis framework reveals relationships between salt stress responsive phenotypes and pathways.Frontiers in plant science · 2024Article
- QTL-Seq identified a genomic region on chromosome 1 for soil-salinity tolerance in FFrontiers in plant science · 2024Article
- Salt stress responses and SNP-based phylogenetic analysis of Thai rice cultivars.The plant genome · 2022Article
- Molecular tools, potential frontiers for enhancing salinity tolerance in rice: A critical review and future prospective.Frontiers in plant science · 2022Review
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genetic diversity is important for developing salt-tolerant rice (Oryza sativa L.) cultivars. Certain Thai rice accessions display salt tolerance at the adult or reproductive stage, but their response to salinity at the seedling stage is unknown. In this study, a total of 10 rice cultivars/line, including eight Thai cultivars and standard salt-tolerant cultivar and susceptible line, were screened using a hydroponic system to identify salt-tolerant genotypes at the seedling stage. Different morphophysiological indicators were used to classify tolerant and susceptible genotypes. Phylogenetic analyses were performed to determine the evolutionary relationships between the cultivars. Results showed that 'Lai Mahk', 'Jao Khao', 'Luang Pratahn', and 'Ma Gawk' exhibited salt stress tolerance comparable with the standard salt-tolerance check 'Pokkali'. Whole-exome single-nucleotide polymorphism (SNP)-based phylogenetic analysis showed that the Thai rice cultivars were monophyletic and distantly related to Pokkali and IR29. Lai Mahk and Luang Pratahn were found closely related when using the whole-exome SNPs for the analysis. This is also the case for the analysis of SNPs from 164 salt-tolerance genes and transcription regulatory genes. The tolerant cultivars shared the same haplotype for 16 genes. Overall, the findings of this study identified four salt-stress-tolerant Thai rice cultivars, which could be used in rice breeding programs for salinity tolerance.
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