ArticleFrontiers in genetics2021
Meta-QTL Analysis in Rice and Cross-Genome Talk of the Genomic Regions Controlling Nitrogen Use Efficiency in Cereal Crops Revealing Phylogenetic Relationship.
Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 8 of them syntheses that pooled it.
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Who cites it
26 citing papers in PubMed, 8 syntheses or guidelines pooled it, 48 citations in OpenAlex.
- Whole-genome meta-analysis coupled with haplotype analysis reveal new genes and functional haplotypes conferring pre-harvest sprouting in rice.BMC plant biology · 2025Pooled it
- Meta-analysis of QTLs for drought, heat, and salinity tolerance identifies high-confidence MQTLs and candidate genes in chickpea (Journal of biosciences · 2025Pooled it
- Meta-analysis of identified genomic regions and candidate genes underlying salinity tolerance in rice (Oryza sativa L.).Scientific reports · 2024Pooled it
- Meta-analysis of the quantitative trait loci associated with agronomic traits, fertility restoration, disease resistance, and seed quality traits in pigeonpea (Cajanus cajan L.).The plant genome · 2023Pooled it
- Genome-Wide Meta-Analysis of QTLs Associated with Root Traits and Implications for Maize Breeding.International journal of molecular sciences · 2023Pooled it
- Consensus genomic regions associated with multiple abiotic stress tolerance in wheat and implications for wheat breeding.Scientific reports · 2022Pooled it
- Pooled it
- Meta-analysis and co-expression analysis revealed stable QTL and candidate genes conferring resistances to Fusarium and Gibberella ear rots while reducing mycotoxin contamination in maize.Frontiers in plant science · 2022Pooled it
- Natural genetic variations underlying iron and zinc uptake efficiency in rice under direct-seeded cultivation conditions.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genome-wide association analysis and candidate gene identification for plant height in Shanxi local foxtail millet varieties.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Unveiling core genomic regions shaping plant architecture, productivity, and seed quality traits in sesame (Sesamum indicum L.): insights from Meta-QTL study into breeding targets.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Unraveling the Genetic Architecture of Photoperiod Sensitivity in Myanmar Rice Landraces Through Integrated GWAS and Transcriptome Analysis.International journal of molecular sciences · 2026Article
- Phenotypic, Physiological, and Gene Expression Analysis for Nitrogen and Phosphorus Use Efficienies in Three Popular Genotypes of Rice (Plants (Basel, Switzerland) · 2024Article
- Meta-QTL analysis and candidate genes for quality traits, mineral content, and abiotic-related traits in wild emmer.Frontiers in plant science · 2024Article
- Defining genomic landscape for identification of potential candidate resistance genes associated with major rice diseases through MetaQTL analysis.Journal of biosciences · 2024Article
- Comprehensive meta-QTL analysis for dissecting the genetic architecture of stripe rust resistance in bread wheat.BMC genomics · 2023Article
- Meta-QTLs, ortho-meta QTLs and related candidate genes for yield and its component traits under water stress in wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Genome-wide association studies of Striga resistance in extra-early maturing quality protein maize inbred lines.G3 (Bethesda, Md.) · 2023Article
- A meta-QTL analysis highlights genomic hotspots associated with phosphorus use efficiency in rice (Frontiers in plant science · 2023Article
- High confidence QTLs and key genes identified using Meta-QTL analysis for enhancing heat tolerance in chickpea (Frontiers in plant science · 2023Article
Corrections and comments
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The phenomenal increase in the use of nitrogenous fertilizers coupled with poor nitrogen use efficiency is among the most important threats to the environment, economic, and social health. During the last 2 decades, a number of genomic regions associated with nitrogen use efficiency (NUE) and related traits have been reported by different research groups, but none of the stable and major effect QTL have been utilized in the marker-assisted introgression/pyramiding program. Compiling the data available in the literature could be very useful in identifying stable and major effect genomic regions associated with the root and NUE-related trait improving the rice grain yield. In the present study, we performed meta-QTL analysis on 1,330 QTL from 29 studies published in the past 2 decades. A total of 76 MQTL with a stable effect over different genetic backgrounds and environments were identified. The significant reduction in the confidence interval of the MQTL compared to the initial QTL resulted in the identification of annotated and putative candidate genes related to the traits considered in the present study. A hot spot region associated with correlated traits on chr 1, 4, and 8 and candidate genes associated with nitrate transporters, nitrogen content, and ammonium uptake on chromosomes 2, 4, 6, and 8 have been identified. The identified MQTL, putative candidate genes, and their orthologues were validated on our previous studies conducted on rice and wheat. The research-based interventions such as improving nitrogen use efficiency
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.