Evidence map›Paper›PMID 34991492›Full record

ArticleBMC plant biology2022

Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction.

Xiaojie Liu, Jonas Blomme, Kenny A Bogaert, Sofie D'hondt, Thomas Wichard, Dieter Deforce, Filip Van Nieuwerburgh, Olivier De Clerck

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. A conserved RWP-RK transcription factor VSR1 controls gametic differentiation in volvocine algae.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Xiaojie LiuPhycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Ghent, Belgium.
Jonas BlommePhycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Ghent, Belgium.
Kenny A BogaertPhycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Ghent, Belgium.
Sofie D'hondtPhycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Ghent, Belgium.
Thomas WichardInstitute for Inorganic and Analytical Chemistry, Jena School for Microbial Communication, Friedrich Schiller University Jena, Jena, Germany.
Dieter DeforceLaboratory of Pharmaceutical Biotechnology, Ghent University, 9000, Ghent, Belgium.
Filip Van NieuwerburghLaboratory of Pharmaceutical Biotechnology, Ghent University, 9000, Ghent, Belgium.
Olivier De ClerckPhycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Ghent, Belgium. Olivier.declerck@ugent.be.
Ghent University · BEFriedrich Schiller University Jena · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe molecular mechanism underlying sexual reproduction in land plants is well understood in model plants and is a target for crop improvement. However, unlike land plants, the genetic basis involved in triggering reproduction and gamete formation remains elusive in most seaweeds, which are increasingly viewed as an alternative source of functional food and feedstock for energy applications.

resultsGametogenesis of Ulva mutabilis, a model organism for green seaweeds, was studied. We analyzed transcriptome dynamics at different time points during gametogenesis following induction of reproduction by fragmentation and removal of sporulation inhibitors. Analyses demonstrated that 45% of the genes in the genome were differentially expressed during gametogenesis. We identified several transcription factors that potentially play a key role in the early gametogenesis of Ulva given the function of their homologs in higher plants and microalgae. In particular, the detailed expression pattern of an evolutionarily conserved transcription factor containing an RWP-RK domain suggested a key role during Ulva gametogenesis.

conclusionsTranscriptomic analyses of gametogenesis in the green seaweed Ulva highlight the importance of a conserved RWP-RK transcription factor in the induction of sexual reproduction. The identification of putative master regulators of gametogenesis provides a starting point for further functional characterization.

Indexed as

Gametogenesis, PlantGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsProtein DomainsReproductionSeaweedTranscription FactorsTranscription, GeneticUlvaPlant ProteinsTranscription FactorsGametogenesisGreen seaweedsReproductionRWP-RK transcription factorTranscriptomeUlva

Identifiers

PMID34991492
PMCPMC8734247
OpenAlexW4205467358

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.