Evidence map›Paper›PMID 34991468›Full record

ArticleBMC plant biology2022

The identification of type I MADS box genes as the upstream activators of an endosperm-specific invertase inhibitor in Arabidopsis.

Tobias Hoffmann, Xiuling Shi, Chuan-Yu Hsu, Aakilah Brown, Quintera Knight, La' Shyra Courtney, Ruqiyah J Mukarram, Dongfang Wang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Evolution and Function of MADS-Box Transcription Factors in Plants.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Tobias HoffmannBiology Department, Spelman College, Atlanta, GA, USA.
Xiuling ShiBiology Department, Spelman College, Atlanta, GA, USA.
Chuan-Yu HsuInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS, USA.
Aakilah BrownBiology Department, Spelman College, Atlanta, GA, USA.
Quintera KnightBiology Department, Spelman College, Atlanta, GA, USA.
La' Shyra CourtneyBiology Department, Spelman College, Atlanta, GA, USA.
Ruqiyah J MukarramBiology Department, Spelman College, Atlanta, GA, USA.
Dongfang WangBiology Department, Spelman College, Atlanta, GA, USA. dwang@spelman.edu.
Spelman College · USMississippi State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNuclear endosperm development is a common mechanism among Angiosperms, including Arabidopsis. During nuclear development, the endosperm nuclei divide rapidly after fertilization without cytokinesis to enter the syncytial phase, which is then followed by the cellularized phase. The endosperm can be divided into three spatial domains with distinct functions: the micropylar, peripheral, and chalazal domains. Previously, we identified two putative small invertase inhibitors, InvINH1 and InvINH2, that are specifically expressed in the micropylar region of the syncytial endosperm. In addition, ectopically expressing InvINH1 in the cellularized endosperm led to a reduction in embryo growth rate. However, it is not clear what are the upstream regulators responsible for the specific expression of InvINHs in the syncytial endosperm.

resultsUsing protoplast transient expression system, we discovered that a group of type I MADS box transcription factors can form dimers to activate InvINH1 promoter. Promoter deletion assays carried out in the protoplast system revealed the presence of an enhancer region in InvINH1 promoter, which contains several consensus cis-elements for the MADS box proteins. Using promoter deletion assay in planta, we further demonstrated that this enhancer region is required for InvINH1 expression in the syncytial endosperm. One of the MADS box genes, AGL62, is a key transcription factor required for syncytial endosperm development. Using promoter-GFP reporter assay, we demonstrated that InvINH1 and InvINH2 are not expressed in agl62 mutant seeds. Collectively, our data supports the role of AGL62 and other type I MADS box genes as the upstream activators of InvINHs expression in the syncytial endosperm.

conclusionsOur findings revealed several type I MADS box genes that are responsible for activating InvINH1 in the syncytial endosperm, which in turn regulates embryo growth rate during early stage of seed development.

Indexed as

Gene Expression Regulation, PlantIntercellular Signaling Peptides and ProteinsArabidopsisArabidopsis Proteinsbeta-FructofuranosidaseEndospermEnhancer Elements, GeneticMADS Domain ProteinsPromoter Regions, GeneticProtoplastsTranscription FactorsArabidopsis ProteinsAT5G46960 protein, Arabidopsisbeta-FructofuranosidaseIntercellular Signaling Peptides and ProteinsMADS Domain ProteinsTranscription FactorsEndospermInvertase inhibitorMADS-boxPRC2Seed development

Identifiers

PMID34991468
PMCPMC8734259
OpenAlexW4205847574

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.