ArticleBMC genomics2022
Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus.
Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 51 citations in OpenAlex.
- Comparative analysis of plastomes of Rubus cultivars and development of molecular markers for species delimitation.Plant cell reports · 2026Article
- New generic classification for Korean Peucedanum L. (Apiaceae) species based on deep phylogenomic study.BMC plant biology · 2026Article
- Chloroplast genome comparison, phylogeny, and molecular evolution of five endemic Potentilla (Rosaceae) species in Mongolia.Genetica · 2026Article
- Comparative genomics on chloroplasts of ChineseFrontiers in plant science · 2026Article
- Article
- Plastid genomic features and phylogenetic placement in Rosa (Rosaceae) through comparative analysis.BMC plant biology · 2025Article
- Assembly and comparative analysis of the complete mitochondrial genome of red raspberry (Rubus idaeus L.) revealing repeat-mediated recombination and gene transfer.BMC plant biology · 2025Article
- Characteristics and phylogenetic analysis of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Comparative chloroplast genome analysis of Ardisia (Myrsinoideae, Primulaceae) in China and implications for phylogenetic relationships and adaptive evolution.BMC plant biology · 2024Article
- Comparative plastome analysis of Arundinelleae (Poaceae, Panicoideae), with implications for phylogenetic relationships and plastome evolution.BMC genomics · 2024Article
- Comparative chloroplast genome analyses of cultivated and wild Capsicum species shed light on evolution and phylogeny.BMC plant biology · 2024Article
- Phylogenetic relationships, selective pressure and molecular markers development of six species in subfamily Polygonoideae based on complete chloroplast genomes.Scientific reports · 2024Article
- Chromosome-scale genome, together with transcriptome and metabolome, provides insights into the evolution and anthocyanin biosynthesis ofHorticulture research · 2024Article
- Thirteen complete chloroplast genomes of the costaceae family: insights into genome structure, selective pressure and phylogenetic relationships.BMC genomics · 2024Article
- Plastid genome and its phylogenetic implications of Asiatic Spiraea (Rosaceae).BMC plant biology · 2024Article
- Assembly and comparative analysis of the complete mitogenome ofFrontiers in plant science · 2024Article
- The complete chloroplast genome sequence of red raspberry (Mitochondrial DNA. Part B, Resources · 2024Article
- Chloroplast genome sequencing and divergence analysis of 18Frontiers in genetics · 2024Article
- PhytoKeys · 2024Article
- Comparative chloroplast genomes ofFrontiers in plant science · 2024Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRubus is the largest genus of the family Rosaceae and is valued as medicinal, edible, and ornamental plants. Here, we sequenced and assembled eight chloroplast (cp) genomes of Rubus from the Dabie Mountains in Central China. Fifty-one Rubus species were comparatively analyzed for the cp genomes including the eight newly discovered genomes and forty-three previously reported in GenBank database (NCBI).
resultsThe eight newly obtained cp genomes had the same quadripartite structure as the other cp genomes in Rubus. The length of the eight plastomes ranged from 155,546 bp to 156,321 bp with similar GC content (37.0 to 37.3%). The results indicated 133-134 genes were annotated for the Rubus plastomes, which contained 88 or 89 protein coding genes (PCGs), 37 transfer RNA genes (tRNAs), and eight ribosomal RNA genes (rRNAs). Among them, 16 (or 18) of the genes were duplicated in the IR region. Structural comparative analysis results showed that the gene content and order were relatively preserved. Nucleotide variability analysis identified nine hotspot regions for genomic divergence and multiple simple sequences repeats (SSRs), which may be used as markers for genetic diversity and phylogenetic analysis. Phylogenetic relationships were highly supported within the family Rosaceae, as evidenced by sub-clade taxa cp genome sequences.
conclusionThus, the whole plastome may be used as a super-marker in phylogenetic studies of this genus.
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