Evidence map›Paper›PMID 34990970›Full record

ArticleJournal of inorganic biochemistry2022

An alkane monooxygenase (AlkB) family in which all electron transfer partners are covalently bound to the oxygen-activating hydroxylase.

Shoshana C Williams, Dahlia Luongo, Marina Orman, Christina L Vizcarra, Rachel N Austin

Open access · greenAbstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Aerobic catabolism of isobutylene byApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Journal of the American Chemical Society · 2025
    Article
  8. High hydrostatic pressure stimulates n-CCommunications biology · 2025
    Article
  9. Metabolic engineering ofFrontiers in bioengineering and biotechnology · 2025
    Article
  10. Structure and Function of Alkane Monooxygenase (AlkB).Accounts of chemical research · 2023
    Review
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shoshana C WilliamsDepartment of Chemistry, Barnard College, 3009 Broadway, NY, NY 10027, USA.
Dahlia LuongoDepartment of Chemistry, Barnard College, 3009 Broadway, NY, NY 10027, USA.
Marina OrmanDepartment of Chemistry, Barnard College, 3009 Broadway, NY, NY 10027, USA.
Christina L VizcarraDepartment of Chemistry, Barnard College, 3009 Broadway, NY, NY 10027, USA.
Rachel N AustinDepartment of Chemistry, Barnard College, 3009 Broadway, NY, NY 10027, USA. Electronic address: raustin@barnard.edu.
Barnard College · US

Funding

Molecular mechanisms of alkane hydroxylase (AlkB) reactivity and selectivityR01GM130989 · NIGMS · BARNARD COLLEGE · PI AUSTIN, RACHEL NAREHOOD · 2020 to 2023
$1.2M
NIGMS NIH HHS R01 GM130989
6 · The paper itself

Abstract

Alkane monooxygenase (AlkB) is a non-heme diiron enzyme that catalyzes the hydroxylation of alkanes. It is commonly found in alkanotrophic organisms that can live on alkanes as their sole source of carbon and energy. Activation of AlkB occurs via two-electron reduction of its diferric active site, which facilitates the binding, activation, and cleavage of molecular oxygen for insertion into an inert CH bond. Electrons are typically supplied by NADH via a rubredoxin reductase (AlkT) to a rubredoxin (AlkG) to AlkB, although alternative electron transfer partners have been observed. Here we report a family of AlkBs in which both electron transfer partners (a ferredoxin and a ferredoxin reductase) appear as an N-terminal gene fusion to the hydroxylase (ferr_ferrR_AlkB). This enzyme catalyzes the hydroxylation of medium chain alkanes (C6-C14), with a preference for C10-C12. It requires only NADH for activity. It is present in a number of bacteria that are known to be human pathogens. A survey of the genome neighborhoods in which is it found suggest it may be involved in alkane metabolism, perhaps facilitating growth of pathogens in non-host environments.

Indexed as

AlkanesCytochrome P-450 CYP4AElectronsElectron TransportFerredoxinsHumansHydroxylationLeptospiraMixed Function OxygenasesNADH, NADPH OxidoreductasesOxygenPseudomonas aeruginosaRubredoxinsAlkanesCytochrome P-450 CYP4AFerredoxinsMixed Function OxygenasesNADH, NADPH OxidoreductasesOxygenrubredoxin-NAD+ reductaseRubredoxinsAlkane hydroxylaseAlkBFused electron-transfer partnersLeptospiraPseudomonas aeruginosa

Identifiers

PMID34990970
PMCPMC8799515
OpenAlexW4205925100

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.