Evidence map›Paper›PMID 34990480›Full record

ArticlePLoS pathogens2022

Probing the structure and function of the protease domain of botulinum neurotoxins using single-domain antibodies.

Kwok-Ho Lam, Jacqueline M Tremblay, Kay Perry, Konstantin Ichtchenko, Charles B Shoemaker, Rongsheng Jin

Abstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. AVIDbase: A biologically accurate structural dataset of nanobody-antigen complexes.Protein science : a publication of the Protein Society · 2026
    Article
  2. Article
  3. Comprehensive Mapping of Immune Nanobody Repertoires with NanoMAP.bioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kwok-Ho LamDepartment of Physiology and Biophysics, University of California, Irvine, California, United States of America.ORCID 0000-0002-7173-6600
Jacqueline M TremblayTufts Cummings School of Veterinary Medicine, North Grafton, Massachusetts, United States of America.
Kay PerryNE-CAT, Department of Chemistry and Chemical Biology, Cornell University, Argonne National Laboratory, Argonne, Illinois, United States of America.ORCID 0000-0002-4046-1704
Konstantin IchtchenkoDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, New York, New York, United States of America.ORCID 0000-0002-2198-1325
Charles B ShoemakerTufts Cummings School of Veterinary Medicine, North Grafton, Massachusetts, United States of America.ORCID 0000-0001-9738-1361
Rongsheng JinDepartment of Physiology and Biophysics, University of California, Irvine, California, United States of America.ORCID 0000-0003-0348-7363

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Novel therapeutic approaches to treatment of botulinum neurotoxin poisoning.R01AI093504 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Konstantin Ichtchenko · 2011 to 2026
$13.9M
Structure and Function of C. Difficile ToxinsR01AI139087 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI Min Dong, Rongsheng Jin · 2018 to 2026
$7.4M
Novel therapeutic approaches to treatment of botulinum neurotoxin poisoning.U01AI093504 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ICHTCHENKO, KONSTANTIN · 2019 to 2021
$3.4M
Molecular mechanisms of botulinum neurotoxin neutralizationR01AI125704 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI JIN, RONGSHENG, SHOEMAKER, CHARLES BIX · 2016 to 2020
$3.0M
Computational design of inhibitors against botulinum neurotoxinR21AI139690 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI JIN, RONGSHENG · 2018 to 2019
$440k
Structural mechanism for recognition of host receptor by botulinum neurotoxin AR21AI123920 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI JIN, RONGSHENG · 2016 to 2017
$425k
NIAID NIH HHS R01 AI093504NIAID NIH HHS R01 AI125704NIAID NIH HHS R01 AI139087NIAID NIH HHS R21 AI123920NIAID NIH HHS R21 AI139690NIAID NIH HHS U01 AI093504NIGMS NIH HHS P41 GM103403
6 · The paper itself

Abstract

Botulinum neurotoxins (BoNTs) are among the deadliest of bacterial toxins. BoNT serotype A and B in particular pose the most serious threat to humans because of their high potency and persistence. To date, there is no effective treatment for late post-exposure therapy of botulism patients. Here, we aim to develop single-domain variable heavy-chain (VHH) antibodies targeting the protease domains (also known as the light chain, LC) of BoNT/A and BoNT/B as antidotes for post-intoxication treatments. Using a combination of X-ray crystallography and biochemical assays, we investigated the structures and inhibition mechanisms of a dozen unique VHHs that recognize four and three non-overlapping epitopes on the LC of BoNT/A and BoNT/B, respectively. We show that the VHHs that inhibit the LC activity occupy the extended substrate-recognition exosites or the cleavage pocket of LC/A or LC/B and thus block substrate binding. Notably, we identified several VHHs that recognize highly conserved epitopes across BoNT/A or BoNT/B subtypes, suggesting that these VHHs exhibit broad subtype efficacy. Further, we identify two novel conformations of the full-length LC/A, that could aid future development of inhibitors against BoNT/A. Our studies lay the foundation for structure-based engineering of protein- or peptide-based BoNT inhibitors with enhanced potencies and cross-subtypes properties.

Indexed as

Single-Domain AntibodiesAnimalsBotulinum ToxinsPeptide HydrolasesProtease InhibitorsProtein DomainsStructure-Activity RelationshipBotulinum ToxinsPeptide HydrolasesProtease InhibitorsSingle-Domain Antibodies

Identifiers

PMID34990480
PMCPMC8769338

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.