Evidence map›Paper›PMID 34990447›Full record

ArticlePLoS genetics2022

Differential gene expression analysis identified determinants of cell fate plasticity during radiation-induced regeneration in Drosophila.

Michelle Ledru, Caitlin A Clark, Jeremy Brown, Shilpi Verghese, Sarah Ferrara, Andrew Goodspeed, Tin Tin Su

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  7. Life science alliance · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Michelle LedruDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, United States of America.
Caitlin A ClarkDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, United States of America.ORCID 0000-0003-3187-9735
Jeremy BrownDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, United States of America.ORCID 0000-0001-7684-7388
Shilpi VergheseDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, United States of America.ORCID 0000-0002-5128-7190
Sarah FerraraUniversity of Colorado Cancer Center, Anschutz Medical Campus, Aurora, Colorado, United States of America.
Andrew GoodspeedUniversity of Colorado Cancer Center, Anschutz Medical Campus, Aurora, Colorado, United States of America.ORCID 0000-0001-7055-7128
Tin Tin SuDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, United States of America.ORCID 0000-0003-0139-4390
University of Colorado Boulder · USUniversity of Colorado Cancer Center · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Cellular Plasticity and Regeneration after Radiation Damage in DrosophilaR35GM130374 · NIGMS · UNIVERSITY OF COLORADO · PI Tin Tin Su · 2019 to 2026
$3.2M
NCI NIH HHS P30 CA046934NIGMS NIH HHS R35 GM130374NIH HHS P40 OD018537
6 · The paper itself

Abstract

Ionizing radiation (IR) is used to treat half of all cancer patients because of its ability to kill cells. IR, however, can induce stem cell-like properties in non-stem cancer cells, potentiating tumor regrowth and reduced therapeutic success. We identified previously a subpopulation of cells in Drosophila larval wing discs that exhibit IR-induced stem cell-like properties. These cells reside in the future wing hinge, are resistant to IR-induced apoptosis, and are capable of translocating, changing fate, and participating in regenerating the pouch that suffers more IR-induced apoptosis. We used here a combination of lineage tracing, FACS-sorting of cells that change fate, genome-wide RNAseq, and functional testing of 42 genes, to identify two key changes that are required cell-autonomously for IR-induced hinge-to-pouch fate change: (1) repression of hinge determinants Wg (Drosophila Wnt1) and conserved zinc-finger transcription factor Zfh2 and (2) upregulation of three ribosome biogenesis factors. Additional data indicate a role for Myc, a transcriptional activator of ribosome biogenesis genes, in the process. These results provide a molecular understanding of IR-induced cell fate plasticity that may be leveraged to improve radiation therapy.

Indexed as

AnimalsApoptosisCell PlasticityCell SeparationCell SurvivalDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsExome SequencingFlow CytometryGene Expression ProfilingGene Expression Regulation, DevelopmentalLarvaRegenerationRNA-SeqTranscription FactorsDNA-Binding ProteinsDrosophila ProteinsMyc protein, DrosophilaTranscription Factorswg protein, DrosophilaWnt1 ProteinZfh2 protein, Drosophila

Identifiers

PMID34990447
PMCPMC8769364
OpenAlexW4205748228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.