Evidence map›Paper›PMID 34990206›Full record

ArticleCirculation2022

Paul Cheng, Robert C Wirka, Lee Shoa Clarke, Quanyi Zhao, Ramendra Kundu, Trieu Nguyen, Surag Nair, Disha Sharma, Hyun-Jung Kim, Huitong Shi and 4 more

Open access · greenAbstract read
In one paragraph

Article in Circulation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Paul Cheng *Division of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).
Robert C Wirka *Division of Cardiology, Departments of Medicine and Cell Biology and Physiology, McAllister Heart Institute, University of North Carolina, Chapel Hill (R.C.W.).
Lee Shoa ClarkeDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).ORCID 0000-0002-6592-1172
Quanyi ZhaoDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).
Ramendra KunduDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).
Trieu NguyenDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).
Surag NairDepartment of Genetics, Stanford University School of Medicine, CA (S.N., A.K.).
Disha SharmaDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).ORCID 0000-0001-9486-2709
Hyun-Jung KimDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).ORCID 0000-0001-6264-0220
Huitong ShiDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).
Themistocles AssimesDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).ORCID 0000-0003-2349-0009
Juyong Brian KimDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).ORCID 0000-0002-9675-2607
Anshul KundajeDepartment of Genetics, Stanford University School of Medicine, CA (S.N., A.K.).ORCID 0000-0003-3084-2287
Thomas QuertermousDivision of Cardiovascular Medicine and the Cardiovascular Institute, Stanford, CA (P.C., L.S.C., Q.Z., R.K., T.N., D.S., H.-j.K., H.S., T.A., J.B.K., T.Q.).ORCID 0000-0002-7645-9067
Cardiovascular Institute of the South · USStanford University · USUniversity of North Carolina at Chapel Hill · US

Funding

Stanford Center for Connecting DNA Variants to Function and PhenotypeUM1HG011972 · NHGRI · STANFORD UNIVERSITY · PI JESSE M ENGREITZ, THOMAS QUERTERMOUS · 2021 to 2026
$10.5M
Causal variant association mechanisms in TCF21 binding coronary disease lociR01HL134817 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2017 to 2026
$6.2M
Mechanism of the Coronary Heart Disease Association at Chromosome 6q23.2R01HL109512 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2011 to 2019
$6.1M
The SMAD3 signaling network in coronary artery disease riskR01HL139478 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2018 to 2026
$3.7M
PDGFD regulates a transcriptional network to modulate smooth muscle cell transition and coronary artery disease riskR01HL156846 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2021 to 2024
$2.7M
Identifying tobacco-genetic interactions through study of the aryl hydrocarbon receptor pathway.R01HL151535 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2021 to 2024
$2.7M
Gene regulatory networks controlling smooth muscle phenotype and vasculardisease riskR01HL171045 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2024 to 2026
$2.1M
LncRNA Transcriptional Mechanisms of Coronary Artery Disease RiskR01HL145708 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2019 to 2022
$1.6M
Identification of causal coronary heart disease variation in smooth muscle cellsR33HL120757 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2016 to 2018
$1.6M
From Locus to Function: Role of ZEB2 in Human Risk of Coronary Artery DiseaseK08HL153798 · NHLBI · STANFORD UNIVERSITY · PI CHENG, PAUL PO SHENG · 2020 to 2024
$933k
Regulation of Inflammation and Atherosclerosis by TCF21K08HL133375 · NHLBI · STANFORD UNIVERSITY · PI KIM, JUYONG BRIAN · 2016 to 2020
$840k
The role of TWIST1 in smooth muscle cells during atherosclerosisK08HL152308 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WIRKA, ROBERT · 2020 to 2024
$765k
NHGRI NIH HHS UM1 HG011972NHLBI NIH HHS F32 HL143847NHLBI NIH HHS K08 HL133375NHLBI NIH HHS K08 HL152308NHLBI NIH HHS K08 HL153798NHLBI NIH HHS R01 HL109512NHLBI NIH HHS R01 HL134817NHLBI NIH HHS R01 HL139478NHLBI NIH HHS R01 HL145708NHLBI NIH HHS R01 HL151535NHLBI NIH HHS R01 HL156846NHLBI NIH HHS R01 HL171045NHLBI NIH HHS R33 HL120757
6 · The paper itself

Abstract

backgroundSmooth muscle cells (SMCs) transition into a number of different phenotypes during atherosclerosis, including those that resemble fibroblasts and chondrocytes, and make up the majority of cells in the atherosclerotic plaque. To better understand the epigenetic and transcriptional mechanisms that mediate these cell state changes, and how they relate to risk for coronary artery disease (CAD), we have investigated the causality and function of transcription factors at genome-wide associated loci.

methodsWe used CRISPR-Cas 9 genome and epigenome editing to identify the causal gene and cells for a complex CAD genome-wide association study signal at 2q22.3. Single-cell epigenetic and transcriptomic profiling in murine models and human coronary artery smooth muscle cells were used to understand the cellular and molecular mechanism by which this CAD risk gene exerts its function.

resultsCRISPR-Cas 9 genome and epigenome editing showed that the complex CAD genetic signals within a genomic region at 2q22.3 lie within smooth muscle long-distance enhancers for

conclusionsThese studies identify

Indexed as

AnimalsAtherosclerosisEpigenesis, GeneticHumansMiceSingle-Cell AnalysisZinc Finger E-box Binding Homeobox 2ZEB2 protein, humanZinc Finger E-box Binding Homeobox 2atherosclerosisepigenomegeneticsmuscle, smooth

Identifiers

PMID34990206
PMCPMC8896308
OpenAlexW4205378691

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.