Evidence map›Paper›PMID 34989906›Full record

ArticleAMB Express2022

Chromogenic Escherichia coli reporter strain for screening DNA damaging agents.

Josué Daniel Mora-Garduño, Jessica Tamayo-Nuñez, Felipe Padilla-Vaca, Fátima Berenice Ramírez-Montiel, Ángeles Rangel-Serrano, Fernando Santos-Escobar, Félix Gutiérrez-Corona, Itzel Páramo-Pérez, Fernando Anaya-Velázquez, Rodolfo García-Contreras and 2 more

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Josué Daniel Mora-GarduñoDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Jessica Tamayo-NuñezDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Felipe Padilla-VacaDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Fátima Berenice Ramírez-MontielDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Ángeles Rangel-SerranoDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Fernando Santos-EscobarDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Félix Gutiérrez-CoronaDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Itzel Páramo-PérezDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Fernando Anaya-VelázquezDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico.
Rodolfo García-ContrerasDepartamento de Microbiología y Parasitología, Facultad de Medicina, UNAM, Mexico City, Mexico.
Naurú Idalia Vargas-MayaDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico. ni.vargas@ugto.mx.
Bernardo FrancoDepartamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, 36050, Guanajuato, Gto, Mexico. bfranco@ugto.mx.ORCID http://orcid.org/0000-0003-4332-3734
Universidad de Guanajuato · MXUniversidad Nacional Autónoma de México · MX

Funding

CIBIOGEM 264456CONACyT CB 182671
6 · The paper itself

Abstract

The presence of pollutants in soil and water has given rise to diverse analytical and biological approaches to detect and measure contaminants in the environment. Using bacterial cells as reporter strains represents an advantage for detecting pollutants present in soil or water samples. Here, an Escherichia coli reporter strain expressing a chromoprotein capable of interacting with soil or water samples and responding to DNA damaging compounds is validated. The reporter strain generates a qualitative signal and is based on the expression of the coral chromoprotein AmilCP under the control of the recA promoter. This strain can be used simply by applying soil or water samples directly and rendering activation upon DNA damage. This reporter strain responds to agents that damage DNA (with an apparent detection limit of 1 µg of mitomycin C) without observable response to membrane integrity damage, protein folding or oxidative stress generating agents, in the latter case, DNA damage was observed. The developed reporter strain reported here is effective for the detection of DNA damaging agents present in soils samples. In a proof-of-concept analysis using soil containing chromium, showing activation at 15.56 mg/L of Cr(VI) present in soil and leached samples and is consistent with Cr(III) toxicity at high concentrations (130 µg). Our findings suggest that chromogenic reporter strains can be applied for simple screening, thus reducing the number of samples requiring analytical techniques.

Indexed as

AmilCPChromium pollutionChromogenic responseDNA damageEnvironmental samplesReporter strain

Identifiers

PMID34989906
PMCPMC8739417
OpenAlexW4206057901

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.