Evidence map›Paper›PMID 34989900›Full record

ArticleWorld journal of microbiology & biotechnology2022

Transcriptomic analysis of formic acid stress response in Saccharomyces cerevisiae.

Lingjie Zeng, Jinxiang Huang, Pixue Feng, Xuemei Zhao, Zaiyong Si, Xiufeng Long, Qianwei Cheng, Yi Yi

Abstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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  11. Applied and environmental microbiology · 2024
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  15. A comprehensive review and comparison of L-tryptophan biosynthesis inFrontiers in bioengineering and biotechnology · 2023
    Review
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  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Lingjie ZengCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Jinxiang HuangCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Pixue FengCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Xuemei ZhaoCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Zaiyong SiCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Xiufeng LongCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Qianwei ChengCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China.
Yi YiCollege of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, 545006, China. 100000522@gxust.edu.cn.ORCID http://orcid.org/0000-0003-4523-5404
Guangxi University of Science and Technology · CN

Funding

national natural science foundation of china 31660250natural science foundation of guangxi province 2018GXNSFAA050116
6 · The paper itself

Abstract

Formic acid is a representative small molecule acid in lignocellulosic hydrolysate that can inhibit the growth of Saccharomyces cerevisiae cells during alcohol fermentation. However, the mechanism of formic acid cytotoxicity remains largely unknown. In this study, RNA-Seq technology was used to study the response of S. cerevisiae to formic acid stress at the transcriptional level. Scanning electron microscopy and Fourier transform infrared spectroscopy were conducted to observe the surface morphology of yeast cells. A total of 1504 genes were identified as being differentially expressed, with 797 upregulated and 707 downregulated genes. Transcriptomic analysis showed that most genes related to glycolysis, glycogen synthesis, protein degradation, the cell cycle, the MAPK signaling pathway, and redox regulation were significantly induced under formic acid stress and were involved in protein translation and synthesis amino acid synthesis genes were significantly suppressed. Formic acid stress can induce oxidative stress, inhibit protein biosynthesis, cause cells to undergo autophagy, and activate the intracellular metabolic pathways of energy production. The increase of glycogen and the decrease of energy consumption metabolism may be important in the adaptation of S. cerevisiae to formic acid. In addition, formic acid can also induce sexual reproduction and spore formation. This study through transcriptome analysis has preliminarily reveal the molecular response mechanism of S. cerevisiae to formic acid stress and has provided a basis for further research on methods used to improve the tolerance to cell inhibitors in lignocellulose hydrolysate.

Indexed as

FormatesSaccharomyces cerevisiaeStress, PhysiologicalTranscriptomeCell CycleEnergy MetabolismFermentationGene Expression ProfilingGene Expression Regulation, FungalGlycolysisLigninOxidative StressProtein BiosynthesisRNA-SeqSaccharomyces cerevisiae ProteinsFormatesformic acidLigninlignocelluloseSaccharomyces cerevisiae ProteinsFormic acidRNA-SeqSaccharomyces cerevisiaeTranscriptome

Identifiers

PMID34989900
OpenAlexW4205224297

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.