Evidence map›Paper›PMID 34989899›Full record

ArticleWorld journal of microbiology & biotechnology2022

Development of an optimization pipeline of asymmetric PCR towards the generation of DNA aptamers: a guide for beginners.

Tzi Shien Yeoh, Andrew Anna, Thean-Hock Tang, Marimuthu Citartan

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Therapeutic Applications of Aptamers.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tzi Shien YeohAdvanced Medical & Dental Institute (AMDI), Universiti Sains Malaysia, 13200, Bertam, Kepala Batas, Penang, Malaysia.
Andrew AnnaAdvanced Medical & Dental Institute (AMDI), Universiti Sains Malaysia, 13200, Bertam, Kepala Batas, Penang, Malaysia.
Thean-Hock TangAdvanced Medical & Dental Institute (AMDI), Universiti Sains Malaysia, 13200, Bertam, Kepala Batas, Penang, Malaysia.
Marimuthu CitartanAdvanced Medical & Dental Institute (AMDI), Universiti Sains Malaysia, 13200, Bertam, Kepala Batas, Penang, Malaysia. citartan@usm.my.ORCID http://orcid.org/0000-0001-5395-0040
Universiti Sains Malaysia · MY

Funding

Universiti Research Grant (USM) 1001.CIPPT.8011095
6 · The paper itself

Abstract

Asymmetric PCR is one of the most utilized strategies in ssDNA generation towards DNA aptamer generation due to its low cost, robustness and the low amount of starting template. Despite its advantages, careful optimization of the asymmetric PCR is still warranted to optimize the yield of ssDNA. In this present study, we have developed an extensive optimization pipeline that involves the optimization of symmetric PCR initially followed by the optimization of asymmetric PCR. In the asymmetric PCR, optimization of primer amounts/ratios, PCR cycles, annealing temperatures, template concentrations, Mg

Indexed as

Aptamers, NucleotideBiotinDNA, Single-StrandedGene LibraryNucleic Acid Amplification TechniquesPolymerase Chain ReactionSELEX Aptamer TechniqueStreptavidinAptamers, NucleotideBiotinDNA, Single-StrandedStreptavidinAsymmetric PCRBiotin-streptavidin-based separationLambda exonuclease digestionssDNA

Identifiers

PMID34989899
OpenAlexW4205603090

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.