Evidence map›Paper›PMID 34989318›Full record

ArticleRNA biology2022

Valdemir Vargas-Junior, Deborah Antunes, Ana Carolina Guimarães, Ernesto Caffarena

Open access · goldAbstract read
In one paragraph

Article in RNA biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Key players in regulatory RNA realm of bacteria.Biochemistry and biophysics reports · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Valdemir Vargas-JuniorComputational Biophysics and Molecular Modeling Group, Scientific Computing Programme (Procc - Fiocruz), Rio de Janeiro, Brazil.ORCID 0000-0003-0159-1319
Deborah AntunesLaboratory of Functional Genomics and Bioinformatics, Oswaldo Cruz Institute (Ioc - Fiocruz), Rio de Janeiro, Brazil.ORCID 0000-0002-2927-0800
Ana Carolina GuimarãesLaboratory of Functional Genomics and Bioinformatics, Oswaldo Cruz Institute (Ioc - Fiocruz), Rio de Janeiro, Brazil.ORCID 0000-0003-1260-543X
Ernesto CaffarenaComputational Biophysics and Molecular Modeling Group, Scientific Computing Programme (Procc - Fiocruz), Rio de Janeiro, Brazil.ORCID 0000-0002-8353-3034
Fundação Oswaldo Cruz · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Riboswitches are RNA sensors affecting post-transcriptional processes through their ability to bind to small molecules. Thiamine pyrophosphate (TPP) riboswitch plays a crucial role in regulating genes involved in synthesizing or transporting thiamine and phosphorylated derivatives in bacteria, archaea, plants, and fungi. Although TPP riboswitch is reasonably well known in bacteria, there is a gap in the knowledge of the fungal TPP riboswitches structure and dynamics, involving mainly sequence variation and TPP interaction with the aptamers. On the other hand, the increase of fungal infections and antifungal resistance raises the need for new antifungal therapies. In this work, we used computational approaches to build three-dimensional models for the three TPP riboswitches identified in

Indexed as

Computational BiologyGene Expression Regulation, FungalModels, BiologicalRiboswitchAspergillus oryzaeEscherichia coliHydrogen BondingNucleic Acid ConformationRNARNA, BacterialStructure-Activity RelationshipThermodynamicsRiboswitchRNARNA, Bacterialaspergillus oryzaeligand binding mechanismmolecular dynamicsmolecular modellingRNATPP riboswitch

Identifiers

PMID34989318
PMCPMC8786325
OpenAlexW4205811797

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.