Evidence map›Paper›PMID 34985736›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Simple Extract Preparation Methods for E. coli-Based Cell-Free Expression.

Alissa C Mullin, Taylor Slouka, Javin P Oza

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Characterizing and Improving pET Vectors for Cell-free Expression.Frontiers in bioengineering and biotechnology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Alissa C MullinDepartment of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA, USA.
Taylor SloukaDepartment of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA, USA.
Javin P OzaDepartment of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA, USA. joza@calpoly.edu.
California Polytechnic State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell-free protein synthesis (CFPS) is a powerful platform for synthetic biology, allowing for the controlled expression of proteins without reliance on living cells. However, the process of producing the cell extract, a key component of cell-free reactions, can be a bottleneck for new users to adopt CFPS as it requires technical knowledge and significant researcher oversight. Here, we provide a detailed method for implementing a simplified cell extract preparation workflow using CFAI media. We also provide a detailed protocol for the alternative, 2x YPTG media-based preparation process, as it represents a useful benchmark within the cell-free community.

Indexed as

Escherichia coliProtein BiosynthesisCell-Free SystemPlant ExtractsSynthetic BiologyPlant Extracts2xYTPGCell-free autoinduction (CFAI)Cell-free expression (CFE)Cell-free protein synthesis (CFPS)In vitro transcription/translation (TX-TL)Synthetic biology

Identifiers

PMID34985736
OpenAlexW4206574283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.