Evidence map›Paper›PMID 34985673›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Ex Vivo Differentiation of Resting CD4+ T Lymphocytes Enhances Detection of Replication Competent HIV-1 in Viral Outgrowth Assays.

Elizabeth R Wonderlich, Monica D Reece, Deanna A Kulpa

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Elizabeth R WonderlichSouthern Research, Frederick, MD, USA.
Monica D ReeceDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, and Yerkes National Primate Research Center, Atlanta, GA, USA.
Deanna A KulpaDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, and Yerkes National Primate Research Center, Atlanta, GA, USA. deanna.kulpa@emory.edu.

Funding

An unbiased OMICs approach to identify mechanisms of Cocaine regulation of the HIV reservoir.R01DA043263 · NIDA · EMORY UNIVERSITY · PI SEKALY, RAFICK PIERRE · 2016 to 2020
$5.8M
OMICs to define impact of cocaine on immunity and HIV persistence in treated HIV infectionR01DA042712 · NIDA · EMORY UNIVERSITY · PI SEKALY, RAFICK PIERRE · 2016 to 2020
$3.5M
CD8 T cell suppression of HIV latency establishment and maintenance in virally suppressed individualsR01AI143414 · NIAID · EMORY UNIVERSITY · PI KULPA, DEANNA A · 2018 to 2022
$1.9M
NIAID NIH HHS HHSN272201500017CNIAID NIH HHS R01 AI143414NIDA NIH HHS R01 DA042712NIDA NIH HHS R01 DA043263
6 · The paper itself

Abstract

Quantifying the number of cells harboring inducible and replication competent HIV-1 provirus is critical to evaluating HIV-1 cure interventions, but precise quantification of the latent reservoir has proven to be technically challenging. Existing protocols to quantify the frequency of replication-competent HIV-1 in resting CD4+ T cells from long-term ART treated individuals have helped to investigate the dynamics of reservoir stability, however these approaches have significant barriers to the induction of HIV-1 expression required to effectively evaluate the intact reservoir. Differentiation of CD4+ T cells to an effector memory phenotype is a successful strategy for promoting latency reversal in vitro, and significantly enhances the performance and sensitivity of viral outgrowth assays.

Indexed as

HIV-1HIV InfectionsCD4-Positive T-LymphocytesCell DifferentiationHumansProvirusesViral LoadVirus LatencyVirus ReplicationHIV-1HIV-1 reservoirResting CD4+ T lymphocytes

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.