Evidence map›Paper›PMID 34985506›Full record

ArticleTranslational vision science & technology2022

Prevalence of RPGR-Mediated Retinal Dystrophy in an Unselected Cohort of Over 5000 Patients.

Sari Tuupanen, Kimberly Gall, Johanna Sistonen, Inka Saarinen, Kati Kämpjärvi, Kirsty Wells, Katja Merkkiniemi, Pernilla von Nandelstadh, Laura Sarantaus, Johanna Känsäkoski and 14 more

Open access · goldAbstract read
In one paragraph

Article in Translational vision science & technology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 20 citations in OpenAlex.

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  18. Retinitis pigmentosa GTPase regulator-related retinopathy and gene therapy.Saudi journal of ophthalmology : official journal of the Saudi Ophthalmological Society
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 3 institutions in 2 countries.

Sari TuupanenBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Kimberly GallBlueprint Genetics Inc, Seattle, WA, USA.
Johanna SistonenBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Inka SaarinenBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Kati KämpjärviBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Kirsty WellsBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Katja MerkkiniemiBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Pernilla von NandelstadhBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Laura SarantausBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Johanna KänsäkoskiBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Emma MårtensonBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Hanna VästinsaloBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Jennifer SchleitBlueprint Genetics Inc, Seattle, WA, USA.
Eeva-Marja SankilaHelsinki University Eye Hospital, Outpatient Clinic for Hereditary Eye Diseases, Helsinki, Finland.
Annakarin KereBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Heidi JunnilaBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Pauli SiivonenBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Margarita AndreevskayaBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Ville KytöläBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Mikko MuonaBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Pertteli SalmenperäBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Samuel MyllykangasBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Juha KoskenvuoBlueprint Genetics OY, Keilaranta, Espoo, Finland.
Tero-Pekka AlastaloBlueprint Genetics Inc, Seattle, WA, USA.
Blueprint Genetics (Finland) · FIBlueprint Medicines (United States) · USUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Comprehensive genetic testing for inherited retinal dystrophy (IRD) is challenged by difficult-to-sequence genomic regions, which are often mutational hotspots, such as RPGR ORF15. The purpose of this study was to evaluate the diagnostic contribution of RPGR variants in an unselected IRD patient cohort referred for testing in a clinical diagnostic laboratory. Methods: A total of 5201 consecutive patients were analyzed with a clinically validated next-generation sequencing (NGS)-based assay, including the difficult-to-sequence RPGR ORF15 region. Copy number variant (CNV) detection from NGS data was included. Variant interpretation was performed per the American College of Medical Genetics and Genomics guidelines. Results: A confirmed molecular diagnosis in RPGR was found in 4.5% of patients, 24.0% of whom were females. Variants in ORF15 accounted for 74% of the diagnoses; 29% of the diagnostic variants were in the most difficult-to-sequence central region of ORF15 (c.2470-3230). Truncating variants made up the majority (91%) of the diagnostic variants. CNVs explained 2% of the diagnostic cases, of which 80% were one- or two-exon deletions outside of ORF15. Conclusions: Our findings indicate that high-throughput, clinically validated NGS-based testing covering the difficult-to-sequence region of ORF15, in combination with high-resolution CNV detection, can help to maximize the diagnostic yield for patients with IRD. Translational Relevance: These results demonstrate an accurate and scalable method for the detection of RPGR-related variants, including the difficult-to-sequence ORF15 hotspot, which is relevant given current and emerging therapeutic opportunities.

Indexed as

Eye ProteinsRetinal DystrophiesExonsFemaleHumansPedigreePrevalenceEye ProteinsRPGR protein, human

Identifiers

PMID34985506
PMCPMC8742508
OpenAlexW4206239110

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.