Evidence map›Paper›PMID 34985300›Full record

ArticleMicrobiology spectrum2022

Characterization of the O-Glycoproteome of Porphyromonas gingivalis.

Paul D Veith, Mikio Shoji, Nichollas E Scott, Eric C Reynolds

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Glycoproteomic and proteomic analysis ofMicrobiology spectrum · 2024
    Article
  10. Review
  11. Article
  12. Article
  13. The Journal of international medical research · 2024
    Article
  14. Article
  15. The intriguing strategies ofFrontiers in oral health · 2024
    Article
  16. An outer membrane vesicle specific lipoprotein promotesCurrent research in microbial sciences · 2024
    Article
  17. The multifaceted role of c-di-AMP signaling in the regulation ofFrontiers in cellular and infection microbiology · 2024
    Article
  18. Characterization of theJournal of bacteriology · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Paul D VeithOral Health Cooperative Research Centre, Melbourne Dental School, Bio21 Institute, University of Melbournegrid.1008.9, Parkville, Victoria, Australia.
Mikio ShojiDepartment of Microbiology and Oral Infection, Graduate School of Biomedical Sciences, Nagasaki Universitygrid.174567.6, Nagasaki, Japan.ORCID 0000-0002-7605-4721
Nichollas E ScottDepartment of Microbiology and Immunology, University of Melbournegrid.1008.9 at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.ORCID 0000-0003-2556-8316
Eric C ReynoldsOral Health Cooperative Research Centre, Melbourne Dental School, Bio21 Institute, University of Melbournegrid.1008.9, Parkville, Victoria, Australia.ORCID 0000-0002-6618-4856
The University of Melbourne · AUNagasaki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porphyromonas gingivalis is an important human pathogen and also a model organism for the Bacteroidetes phylum. O-glycosylation has been reported in this phylum with findings that include the O-glycosylation motif, the structure of the O-glycans in a few species, and an extensive O-glycoproteome analysis in Tannerella forsythia. However, O-glycosylation has not yet been confirmed in P. gingivalis. We therefore used glycoproteomics approaches including partial deglycosylation with trifluoromethanesulfonic acid as well as both HILIC and FAIMS based glycopeptide enrichment strategies leading to the identification of 257 putative glycosylation sites in 145 glycoproteins. The sequence of the major O-glycan was elucidated to be HexNAc-HexNAc(P-Gro-[Ac]

Indexed as

Amino Acid MotifsBacterial ProteinsCarbohydrate SequenceGlycoproteinsGlycosylationHumansPolysaccharidesPorphyromonas gingivalisBacterial ProteinsGlycoproteinsPolysaccharidesbiosynthesisglycansglycoproteinsmass spectrometryO-glycosylationPorphyromonas gingivalisproteometrifluoromethanesulfonic acid

Identifiers

PMID34985300
PMCPMC8729774
OpenAlexW4206200878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.