Evidence map›Paper›PMID 34984435›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2022

Whole Genome Sequencing Assessing Impact of Diabetes Mellitus on Tuberculosis Mutations and Type of Recurrence in India.

Vidya Mave, Liang Chen, Uma Devi Ranganathan, Dileep Kadam, Vijay Vishwanathan, Rahul Lokhande, Siva Kumar S, Anju Kagal, Neeta N Pradhan, Shri Vijay Bala Yogendra Shivakumar and 11 more

Open access · greenAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Influence of Diabetes Mellitus on the Development of Multidrug-Resistant Tuberculosis (MDR-TB) in Relation With Genetic Mutations ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Vidya MaveByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.ORCID 0000-0001-8509-4517
Liang ChenHackensack Meridian Health, Center for Discovery and Innovation, Nutley, New Jersey, USA.
Uma Devi RanganathanICMR-National Institute for Research in Tuberculosis, Chennai, India.
Dileep KadamByramjee-Jeejeebhoy Government Medical College, Pune, India.
Vijay VishwanathanProfessor M. Vishwanathan Diabetes Research Center, Chennai, India.
Rahul LokhandeByramjee-Jeejeebhoy Government Medical College, Pune, India.
Siva Kumar SICMR-National Institute for Research in Tuberculosis, Chennai, India.
Anju KagalByramjee-Jeejeebhoy Government Medical College, Pune, India.
Neeta N PradhanByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Shri Vijay Bala Yogendra ShivakumarJohns Hopkins India, Pune, India.
Mandar S ParadkarByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Sona DeshmukhByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Jeffrey A TornheimJohns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Hardy KornfeldUniversity of Massachusetts, Boston, Massachusetts, USA.
Maha FarhatHarvard Medical School, Boston, Massachusetts, USA.
Amita GuptaJohns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Chandrasekaran PadmapriyadarsiniICMR-National Institute for Research in Tuberculosis, Chennai, India.
Nikhil GupteByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Jonathan E GolubJohns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Barun MathemaColumbia University, New York, New York, USA.
Barry N KreiswirthHackensack Meridian Health, Center for Discovery and Innovation, Nutley, New Jersey, USA.
Johns Hopkins University · USGovernment Medical College · INNational Institute of Research in Tuberculosis · INHackensack Meridian Health · USColumbia University · USHarvard University · USIndia Diabetes Research Foundation · INUniversity of Massachusetts Boston · US

Funding

The Johns Hopkins Baltimore-Washington-India Clinical Trials Unit (BWI CTU)UM1AI069465 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Charles W. Flexner, Amita Gupta · 2012 to 2026
$34.1M
A nanopore biosensor for leveling Mtb antigens in bloodR01AI144168 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI Christopher J Lyon · 2022 to 2026
$3.0M
Multiplexed detection of cell-free M. Tuberculosis DNA and its drug-resistant variants in bloodR01AI175618 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI Zhen Huang, Jeffrey Tornheim · 2023 to 2026
$2.9M
Whole Genome Sequencing of Drug Resistant Tuberculosis in India: Genotype-Phenotype Correlation, Clinical Impact of Resistance, and Sequencing Directly from SputumK23AI135102 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TORNHEIM, JEFFREY · 2018 to 2021
$776k
NIAID NIH HHS K23 AI135102NIAID NIH HHS R01 AI144168NIAID NIH HHS R01 AI175618NIAID NIH HHS UM1 AI069465NIH HHS R01A1I097494
6 · The paper itself

Abstract

backgroundEvidence describing the impact of diabetes mellitus (DM) on the recurrence and mutation rate of Mycobacterium tuberculosis (Mtb) is limited.

methodsThis study was nested in 3 cohort studies of tuberculosis (TB) patients with and without DM in India. Paired Mtb isolates recovered at baseline and treatment failure/recurrence underwent whole genome sequencing. We compared acquisition of single-nucleotide polymorphisms (SNPs), TB drug resistance mutations, and type of recurrence (endogenous reactivation [<8 SNPs] or exogenous reinfection [≥8 SNPs]) by DM status.

resultsOf 1633 enrolled in the 3 parent cohorts, 236 (14.5%) had microbiologically confirmed TB treatment failure/recurrence; 76 Mtb isolate pairs were available for sequencing (22 in TB-DM and 54 in TB-only). The SNP acquisition rate was overall was 0.43 (95% confidence interval [CI], .25-.64) per 1 person-year (PY); 0.77 (95% CI, .40-1.35) per 1 PY, and 0.44 (95% CI, .19-.86) per 1 PY at treatment failure and recurrence, respectively. Significant difference in SNP rates by DM status was seen at recurrence (0.21 [95% CI, .04-.61]) per 1 PY for TB-only vs 1.28 (95% CI, .41-2.98) per 1 PY for TB-DM; P = .02). No significant difference in SNP rates by DM status was observed at treatment failure. Acquired TB drug resistance was seen in 4 of 18 (22%) in TB-DM vs 4 of 45 (9%) in TB-only (P = .21). Thirteen (17%) participants had exogenous reinfection; the reinfection rate at recurrence was 25% (3/12) for TB-DM vs 17% (4/24) in TB-only (P = .66).

conclusionsConsiderable intrahost Mtb mutation rates were present at recurrence among patients with DM in India. One-fourth of patients with DM had exogenous reinfection at recurrence.

Indexed as

Diabetes MellitusMycobacterium tuberculosisTuberculosisHumansIndiaMutationRecurrenceReinfectionWhole Genome Sequencingdiabetes mellitusdrug resistance and recurrenceIndiatuberculosiswhole genome sequencing

Identifiers

PMID34984435
PMCPMC9477453
OpenAlexW4205820961

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.