Evidence map›Paper›PMID 34983038›Full record

ArticleJournal of physics. Condensed matter : an Institute of Physics journal2022

Tiling a tubule: how increasing complexity improves the yield of self-limited assembly.

Thomas E Videbæk, Huang Fang, Daichi Hayakawa, Botond Tyukodi, Michael F Hagan, W Benjamin Rogers

Open access · hybridAbstract read
In one paragraph

Article in Journal of physics. Condensed matter : an Institute of Physics journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. From toroids to helical tubules: Kirigami-inspired programmable assembly of two-periodic curved crystals from DNA origami.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Measuring multisubunit mechanics of geometrically programmed colloidal assemblies via cryo-EM multi-body refinement.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  8. Limits of economy and fidelity for programmable assembly of size-controlled triply periodic polyhedra.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Hierarchical assembly is more robust than egalitarian assembly in synthetic capsids.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Geometrically programmed self-limited assembly of tubules using DNA origami colloids.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Thomas E VidebækMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453, United States of America.ORCID 0000-0001-9158-2824
Huang FangMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453, United States of America.ORCID 0000-0001-5802-9330
Daichi HayakawaMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453, United States of America.ORCID 0000-0002-2783-5943
Botond TyukodiMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453, United States of America.ORCID 0000-0001-6868-1234
Michael F HaganMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453, United States of America.ORCID 0000-0002-9211-2434
W Benjamin RogersMartin A. Fisher School of Physics, Brandeis University, Waltham, MA 02453, United States of America.ORCID 0000-0001-8587-8215
Brandeis University · US

Funding

Computational modeling of viral capsid and bacterial microcompartment assemblyR01GM108021 · NIGMS · BRANDEIS UNIVERSITY · PI HAGAN, MICHAEL F · 2013 to 2021
$2.7M
NIGMS NIH HHS R01 GM108021
6 · The paper itself

Abstract

The ability to design and synthesize ever more complicated colloidal particles opens the possibility of self-assembling a zoo of complex structures, including those with one or more self-limited length scales. An undesirable feature of systems with self-limited length scales is that thermal fluctuations can lead to the assembly of nearby, off-target states. We investigate strategies for limiting off-target assembly by using multiple types of subunits. Using simulations and energetics calculations, we explore this concept by considering the assembly of tubules built from triangular subunits that bind edge to edge. While in principle, a single type of triangle can assemble into tubules with a monodisperse width distribution, in practice, the finite bending rigidity of the binding sites leads to the formation of off-target structures. To increase the assembly specificity, we introduce tiling rules for assembling tubules from multiple species of triangles. We show that the selectivity of the target structure can be dramatically improved by using multiple species of subunits, and provide a prescription for choosing the minimum number of subunit species required for near-perfect yield. Our approach of increasing the system's complexity to reduce the accessibility of neighboring structures should be generalizable to other systems beyond the self-assembly of tubules.

Indexed as

Binding Sitescomplexityfree-energy landscapeMonte Carlo simulationsmulticomponentself-assemblyself-limited assemblyvalence-limited interactions

Identifiers

PMID34983038
PMCPMC8857047
OpenAlexW3213334492

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.