Evidence map›Paper›PMID 34982771›Full record

ArticlePLoS genetics2022

The SWI/SNF chromatin remodeling assemblies BAF and PBAF differentially regulate cell cycle exit and cellular invasion in vivo.

Jayson J Smith, Yutong Xiao, Nithin Parsan, Taylor N Medwig-Kinney, Michael A Q Martinez, Frances E Q Moore, Nicholas J Palmisano, Abraham Q Kohrman, Mana Chandhok Delos Reyes, Rebecca C Adikes and 6 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  17. Loss of the E3 ubiquitin ligases UBR-5 or HECD-1 restoresProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. A light sheet fluorescence microscopy protocol forFrontiers in cell and developmental biology · 2022
    Article
  20. Imaging developmental cell cycles.Biophysical journal · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Jayson J SmithDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0001-8525-7873
Yutong XiaoDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0001-7279-3423
Nithin ParsanDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0001-6284-2957
Taylor N Medwig-KinneyDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0001-7989-3291
Michael A Q MartinezDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0003-1178-7139
Frances E Q MooreDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-9016-4679
Nicholas J PalmisanoDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-7992-4462
Abraham Q KohrmanDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-3726-1090
Mana Chandhok Delos ReyesDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-7786-2106
Rebecca C AdikesDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-7526-8701
Simeiyun LiuDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-4495-1073
Sydney A BrachtDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.
Wan ZhangDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.
Kailong WenThe Grossman Institute for Neuroscience, Quantitative Biology, and Human Behavior, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0002-7871-1086
Paschalis KratsiosThe Grossman Institute for Neuroscience, Quantitative Biology, and Human Behavior, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0002-1363-9271
David Q MatusDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, United States of America.ORCID 0000-0002-1570-5025
Stony Brook University · USUniversity of Chicago · USJohns Hopkins University · USPrinceton University · USUniversity of California, Santa Cruz · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Elucidating the mechanisms underlying cell cycle regulation of invasive behaviorR01GM121597 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MATUS, DAVID · 2017 to 2021
$2.1M
Molecular mechanisms of motor neuron terminal identityR01NS118078 · NINDS · UNIVERSITY OF CHICAGO · PI KRATSIOS, PASCHALIS · 2020 to 2024
$1.8M
Elucidating the Relationship Between Cell Proliferation and InvasionF30CA257383 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MARTINEZ, MICHAEL ADRIAN · 2021 to 2024
$184k
Transcriptional regulation of morphogenetic behavior and invasive cell fate specification in C. elegansF31HD100091 · NICHD · STATE UNIVERSITY NEW YORK STONY BROOK · PI KINNEY, TAYLOR · 2019 to 2021
$117k
Delineating the role of cell cycle control of acquisition and maintenance of the invasive phenotypeF31GM128319 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI KOHRMAN, ABRAHAM · 2018 to 2019
$77k
NCI NIH HHS F30 CA257383NICHD NIH HHS F31 HD100091NIGMS NIH HHS F31 GM128319NIGMS NIH HHS R01 GM121597NIGMS NIH HHS T32 GM008444NIH HHS P40 OD010440NINDS NIH HHS R01 NS118078
6 · The paper itself

Abstract

Chromatin remodelers such as the SWI/SNF complex coordinate metazoan development through broad regulation of chromatin accessibility and transcription, ensuring normal cell cycle control and cellular differentiation in a lineage-specific and temporally restricted manner. Mutations in genes encoding the structural subunits of chromatin, such as histone subunits, and chromatin regulating factors are associated with a variety of disease mechanisms including cancer metastasis, in which cancer co-opts cellular invasion programs functioning in healthy cells during development. Here we utilize Caenorhabditis elegans anchor cell (AC) invasion as an in vivo model to identify the suite of chromatin agents and chromatin regulating factors that promote cellular invasiveness. We demonstrate that the SWI/SNF ATP-dependent chromatin remodeling complex is a critical regulator of AC invasion, with pleiotropic effects on both G0 cell cycle arrest and activation of invasive machinery. Using targeted protein degradation and enhanced RNA interference (RNAi) vectors, we show that SWI/SNF contributes to AC invasion in a dose-dependent fashion, with lower levels of activity in the AC corresponding to aberrant cell cycle entry and increased loss of invasion. Our data specifically implicate the SWI/SNF BAF assembly in the regulation of the G0 cell cycle arrest in the AC, whereas the SWI/SNF PBAF assembly promotes AC invasion via cell cycle-independent mechanisms, including attachment to the basement membrane (BM) and activation of the pro-invasive fos-1/FOS gene. Together these findings demonstrate that the SWI/SNF complex is necessary for two essential components of AC invasion: arresting cell cycle progression and remodeling the BM. The work here provides valuable single-cell mechanistic insight into how the SWI/SNF assemblies differentially contribute to cellular invasion and how SWI/SNF subunit-specific disruptions may contribute to tumorigeneses and cancer metastasis.

Indexed as

MutationAnimalsBasement MembraneCaenorhabditis elegansCaenorhabditis elegans ProteinsCell CycleCell MovementChromosomal Proteins, Non-HistoneCRISPR-Cas SystemsGene Expression RegulationModels, AnimalPhenotypeProto-Oncogene Proteins c-fosSingle-Cell AnalysisCaenorhabditis elegans ProteinsChromosomal Proteins, Non-HistoneFOS-1 protein, C elegansProto-Oncogene Proteins c-fos

Identifiers

PMID34982771
PMCPMC8759636
OpenAlexW4226146636

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.