Evidence map›Paper›PMID 34982264›Full record

ArticleMedical oncology (Northwood, London, England)2022

Identification of the critical genes and miRNAs in hepatocellular carcinoma by integrated bioinformatics analysis.

Jun Wang, Chuyan Wang, Liuqing Yang, Kexin Li

Abstract read
PubMed Publisher
In one paragraph

Article in Medical oncology (Northwood, London, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jun WangSchool of Biological Food and Environment, Hefei University, Hefei, 230601, China. junw@hfuu.edu.cn.ORCID http://orcid.org/0000-0002-9174-3699
Chuyan WangSchool of Biological Food and Environment, Hefei University, Hefei, 230601, China.
Liuqing YangSchool of Biological Food and Environment, Hefei University, Hefei, 230601, China.
Kexin LiSchool of Biological Food and Environment, Hefei University, Hefei, 230601, China.
Hefei University · CNHefei University of Technology · CN

Funding

Hefei University 20RC48Hefei University 20ZR09ZDB
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is a global health problem with complex etiology and pathogenesis. Microarray data are increasingly being used as a novel and effective method for cancer pathogenesis analysis. An integrative analysis of genes and miRNA for HCC was conducted to unravel the potential prognosis of HCC. Two gene microarray datasets (GSE89377 and GSE101685) and two miRNA expression profiles (GSE112264 and GSE113740) were obtained from Gene Expression Omnibus database. A total of 177 differently expressed genes (DEGs) and 80 differently expressed miRNAs (DEMs) were screened out. Functional enrichment of DEGs was proceeded by Clue GO and these genes were significantly enriched in the chemical carcinogenesis pathway. A protein-protein interaction network was then established on the STRING platform, and ten hub genes (CDC20, TOP2A, ASPM, NCAPG, AURKA, CYP2E1, HMMR, PRC1, TYMS, and CYP4A11) were visualized via Cytoscape software. Then, a miRNA-target network was established to identify the hub dysregulated miRNA. A key miRNA (hsa-miR-124-3p) was filtered. Finally, the miRNA-target-transcription factor network was constructed for hsa-miR-124-3p. The network for hsa-miR-124-3p included two transcription factors (TFs) and five targets. These identified DEGs and DEMs, TFs, targets, and regulatory networks may help advance our understanding of the underlying pathogenesis of HCC.

Indexed as

Microarray AnalysisCarcinogenesisCarcinoma, HepatocellularDatabases, GeneticGene Expression ProfilingGene Regulatory NetworksHumansLiver NeoplasmsMicroRNAsPrognosisMicroRNAsBioinformaticHepatocellular carcinomaHub genesKey miRNARegulatory network

Identifiers

PMID34982264
OpenAlexW4221024080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.